RNA id: TU157475


Basic Information

Item Value
RNA id TU157475
length 315
lncRNA type intronic
GC content 0.43
exon number 2
gene id G116574
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 37671836 ~ 37673086 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctggagtgggatgggcacttggcagcagcagctcaggacatggggagagaaagagaaagcagatgattaggacagggtttatatttgctggataagctgtaagaggaagaaaattgtaatgagacattactcaaaagcttgagcaaatagaaatgttttgagtctagatttaaagattgagagtgtgtcccgtatattaatagggaggctattccaaagttggggagctttataaaagaacgctcttcctcctgcatagttttttctaatacgcgggactaataacaggccagcgtcttgggagcggagtgaacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157460 lncRNA upstream 59532 37606985 ~ 37612304 (+) False gabra5
TU157440 lncRNA upstream 235344 37436248 ~ 37436492 (+) True G116553
TU157423 lncRNA upstream 398834 37267631 ~ 37273002 (+) True G116536
TU157420 lncRNA upstream 399496 37265276 ~ 37272340 (+) False G116536
TU157426 lncRNA upstream 419066 37252207 ~ 37252770 (+) True G116539
TU157482 lncRNA downstream 127131 37800217 ~ 37800754 (+) True G116580
XR_002650724.1 lncRNA downstream 179557 37852643 ~ 37886735 (+) True LOC111193782
TU157674 lncRNA downstream 560388 38233474 ~ 38234081 (+) True G116730
TU157759 lncRNA downstream 717304 38390390 ~ 38394530 (+) True LOC103036266
TU157828 lncRNA downstream 833695 38506781 ~ 38511435 (+) True G116837
XM_022675796.1 mRNA upstream 59514 37524851 ~ 37612322 (+) True gabra5
XM_022675792.1 mRNA upstream 438627 37221320 ~ 37233209 (+) True LOC103043103
XM_022675789.1 mRNA upstream 438627 37221320 ~ 37233209 (+) False LOC103043103
XM_022675791.1 mRNA upstream 438627 37221320 ~ 37233209 (+) False LOC103043103
XM_022675790.1 mRNA upstream 438627 37221320 ~ 37233209 (+) False LOC103043103
XM_007249105.3 mRNA downstream 474856 38147942 ~ 38154159 (+) True nipa1
XM_007249101.3 mRNA downstream 482013 38155099 ~ 38164964 (+) False nipa2
XM_007249100.3 mRNA downstream 483982 38157068 ~ 38164964 (+) True nipa2
XM_022675806.1 mRNA downstream 511239 38184325 ~ 38189931 (+) True fndc9
XM_007249094.2 mRNA downstream 574888 38247974 ~ 38262903 (+) True chst7
TU157374 other upstream 560238 37100014 ~ 37111598 (+) False LOC103045245
XR_002650721.1 other upstream 957952 36657392 ~ 36713884 (+) False LOC103044253
trnaf-gaa_2 other upstream 1422991 36248773 ~ 36248845 (+) True trnaf-gaa_2
TU156853 other upstream 1683776 35982119 ~ 35988060 (+) True G116103
TU156628 other upstream 1937477 35730653 ~ 35734359 (+) True G115931
TU158023 other downstream 1685785 39358871 ~ 39359388 (+) True G116997
TU158258 other downstream 3126385 40799471 ~ 40803543 (+) False LOC103033994
TU158255 other downstream 3126485 40799571 ~ 40803543 (+) False LOC103033994
TU158846 other downstream 4678721 42351807 ~ 42355784 (+) True G117642
TU158848 other downstream 4678721 42351807 ~ 42355784 (+) False G117642

Expression Profile