RNA id: TU157674


Basic Information

Item Value
RNA id TU157674
length 542
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G116730
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 38233474 ~ 38234081 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTACAATTTTGACTCATTTATTGTGCACAAACAGCCATTGAATGAGTAAAATAGTTTTCACATACGTTCACATACGTACGTActtacgtacacacacacacacacaatgaaatagcataTATGCATTTTCGGACACACACATAACCAGTAGCAAAAATCTCTTCATTCATACATTTCTTTGCATGCCTACAATGGTATATACACTTGTTGAGGAAAACAATTTTGCCTTATACAATTTTTAAGTGCAGCAGTTACAATTTAACTGCTTTTACAAAATTACAATGTGCAATGTCTTGTCTTCACTTTGACTGCCCTTGTgcgtacacacactcacacacagctacCTAGACAATGAAAAAGAGCTGCTGATTGACACTGCTGGTTCACCATGTGCTATAAACTCAGACCTCCTAGAAggatgagaaaaaaatagacaGTACAGAAGAAGCCATTCAGCTTTAGCTGTCAAGAGTTGCTGTGTTTGAGGTTGACAGTCGTCTAGCACTGCTCAAAACCAGCCATCAGAGACAGGGCGAGAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650724.1 lncRNA upstream 346739 37852643 ~ 37886735 (+) True LOC111193782
TU157482 lncRNA upstream 432720 37800217 ~ 37800754 (+) True G116580
TU157475 lncRNA upstream 560388 37671836 ~ 37673086 (+) True G116574
TU157460 lncRNA upstream 621170 37606985 ~ 37612304 (+) False gabra5
TU157440 lncRNA upstream 796982 37436248 ~ 37436492 (+) True G116553
TU157759 lncRNA downstream 156309 38390390 ~ 38394530 (+) True LOC103036266
TU157828 lncRNA downstream 272700 38506781 ~ 38511435 (+) True G116837
TU157832 lncRNA downstream 302762 38536843 ~ 38537047 (+) True G116841
TU157836 lncRNA downstream 336323 38570404 ~ 38570657 (+) True G116845
TU157843 lncRNA downstream 392713 38626794 ~ 38628164 (+) True G116852
XM_022675806.1 mRNA upstream 43543 38184325 ~ 38189931 (+) True fndc9
XM_007249101.3 mRNA upstream 68510 38155099 ~ 38164964 (+) False nipa2
XM_007249100.3 mRNA upstream 68510 38157068 ~ 38164964 (+) True nipa2
XM_007249105.3 mRNA upstream 79315 38147942 ~ 38154159 (+) True nipa1
XM_015605770.2 mRNA upstream 403943 37620036 ~ 37829531 (+) True gabrg3
XM_007249094.2 mRNA downstream 13893 38247974 ~ 38262903 (+) True chst7
XM_007249096.3 mRNA downstream 113787 38347868 ~ 38355991 (+) True rp2
XM_022675807.1 mRNA downstream 114668 38348749 ~ 38355991 (+) False rp2
XM_007249098.3 mRNA downstream 123777 38357858 ~ 38374376 (+) False jade3
XM_007249097.3 mRNA downstream 123781 38357862 ~ 38376427 (+) True jade3
TU157374 other upstream 1121876 37100014 ~ 37111598 (+) False LOC103045245
XR_002650721.1 other upstream 1519590 36657392 ~ 36713884 (+) False LOC103044253
trnaf-gaa_2 other upstream 1984629 36248773 ~ 36248845 (+) True trnaf-gaa_2
TU156853 other upstream 2245414 35982119 ~ 35988060 (+) True G116103
TU156628 other upstream 2499115 35730653 ~ 35734359 (+) True G115931
TU158023 other downstream 1124790 39358871 ~ 39359388 (+) True G116997
TU158258 other downstream 2565390 40799471 ~ 40803543 (+) False LOC103033994
TU158255 other downstream 2565490 40799571 ~ 40803543 (+) False LOC103033994
TU158846 other downstream 4117726 42351807 ~ 42355784 (+) True G117642
TU158848 other downstream 4117726 42351807 ~ 42355784 (+) False G117642

Expression Profile