RNA id: TU157836


Basic Information

Item Value
RNA id TU157836
length 254
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G116845
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 38570404 ~ 38570657 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tctggagtggttttactacacaggccgggaggccagttagcagggcattgcagtagtcgaggcgtgagatgacgaccgcttgcaccaggagttgggtggcctgttgcgtcaagaatggtctaatttttcggatgttatagagcgcaaagcggcaggaccgagcaactgaggccacatggtgcgtgaaggagagttggtcatcaaccagaacacccaggttcctagcaacctttgtcggtgagagagagagagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157832 lncRNA upstream 33357 38536843 ~ 38537047 (+) True G116841
TU157828 lncRNA upstream 58969 38506781 ~ 38511435 (+) True G116837
TU157759 lncRNA upstream 175874 38390390 ~ 38394530 (+) True LOC103036266
TU157674 lncRNA upstream 336323 38233474 ~ 38234081 (+) True G116730
XR_002650724.1 lncRNA upstream 683669 37852643 ~ 37886735 (+) True LOC111193782
TU157843 lncRNA downstream 56137 38626794 ~ 38628164 (+) True G116852
TU157860 lncRNA downstream 382570 38953227 ~ 38954811 (+) True G116869
TU157880 lncRNA downstream 409752 38980409 ~ 38983559 (+) True G116886
TU157973 lncRNA downstream 514022 39084679 ~ 39084900 (+) True G116957
TU157976 lncRNA downstream 580172 39150829 ~ 39151218 (+) True G116960
XM_007249086.3 mRNA upstream 136547 38417049 ~ 38433857 (+) True cth
XM_007249083.2 mRNA upstream 163107 38403349 ~ 38407297 (+) True nit2
XM_022675809.1 mRNA upstream 175882 38390280 ~ 38394522 (+) False LOC103036266
XM_022675810.1 mRNA upstream 176312 38390277 ~ 38394092 (+) False LOC103036266
XM_022675808.1 mRNA upstream 182358 38381185 ~ 38388046 (+) False LOC103035541
XM_022675822.1 mRNA downstream 461470 39032127 ~ 39081111 (+) True opa1
XM_007249068.2 mRNA downstream 461470 39032127 ~ 39081111 (+) False opa1
XM_007249069.2 mRNA downstream 461470 39032127 ~ 39081111 (+) False opa1
XM_007249064.3 mRNA downstream 639157 39209814 ~ 39211823 (+) True hes1
XM_022675824.1 mRNA downstream 946843 39517500 ~ 39594023 (+) True LOC103022251
TU157374 other upstream 1458806 37100014 ~ 37111598 (+) False LOC103045245
XR_002650721.1 other upstream 1856520 36657392 ~ 36713884 (+) False LOC103044253
trnaf-gaa_2 other upstream 2321559 36248773 ~ 36248845 (+) True trnaf-gaa_2
TU156853 other upstream 2582344 35982119 ~ 35988060 (+) True G116103
TU156628 other upstream 2836045 35730653 ~ 35734359 (+) True G115931
TU158023 other downstream 788214 39358871 ~ 39359388 (+) True G116997
TU158258 other downstream 2228814 40799471 ~ 40803543 (+) False LOC103033994
TU158255 other downstream 2228914 40799571 ~ 40803543 (+) False LOC103033994
TU158846 other downstream 3781150 42351807 ~ 42355784 (+) True G117642
TU158848 other downstream 3781150 42351807 ~ 42355784 (+) False G117642

Expression Profile