RNA id: TU157991


Basic Information

Item Value
RNA id TU157991
length 4027
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G116975
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 39271897 ~ 39282073 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTTCAGATGCAAgcttataatacatttattggtATTATGAAATACATTCACTTAATTAGAACAACAATTTTTGTACGTCACTATACAATCTTGACTTGATCTTATTACACATTCATATCACTGCTAAACTAGggcagctgaaatgaaataacaaaatgaaTCTCTTttaatctccctctctctttctctccctccgtcacacatacacacatatacaattaATCCTTCTCTGCTGACATAGTAAATGAGTTCCCTGTCAATCTCCAATAACAACATCTCACAAGAAgcaaaaacatcaataaaagcAGTGtcttataataatacaaaatacatttaaatagtcagggctggactgggacaaaaaaaaaatcggccctggcatttttggtttagaccggCCCCTCATAATTAGCAGAGCACAACCCACTTGTAATTTATGTACGTGGGGTTACAGAGAATTGTAATGTATCATCAgcatattaaataaaagaagttTAGTGTCTATTGTTAACCACACCATTTTGTCTGATCTGTGTAGTTTAAGATTGattgataaaattaaattatattagttgtgtcaatcacttacatcagagagagagagacagtcagagagagagagagagagacagagaaagaaagagaaagagcgagaaagggaaagagagacagtacGAGCGTCGGACCCAGTCGCCCATGCGCTCAGAGCTAAACCACGCAGAGAAAGGGTGTGGCCGATTTCTTCCTATATCCTGATTGGTTCAGTCTACTGTCTATATTGAGTATGGGCCAATGGGCCGCCCCCTCTCTTAGAAAAGCATCGGCCCCCGAGGATTGTCGGCCCACCAGGCATTTGCCCGGTACGCCAGATTACCAGTCCAACCCTGTAAATAGTATACAAATGTGCTTTTAAGAAATTATTACAAAGAACATaacaagacaaaaaatatataaaatcttaTTTAATCAAAACAATTGACACTGTCAATAAAAAgaccaaaaataaaagttaagtcATAAAAGGTTGTGCACATGCATTTGTTATACATATATTCATTtctaaaaatataagaaataaatttcaaaattaaatataaatcttCTGAGTTGTAGATGCTTAAGTTAATTTCTAAAATTGTCTATACATCATCTGTTTAACTCCTCTGAACCAATTGTAGCAAATGCCAACtaaacttttcagatttttagcCCAATCACAATAGCAATTCTCTAACACATGCTACACAcagtaattcatttaaaaaaaaggcaaaagaacATGGTGTGGCTTTTACAActatattacaactttaattaTCTtggaatatattttaaacactgctttttacaaaaataattaatttctaattttattccaTTATCTCCCCAATTTGCATGGCCAATTACACAACCAACTCATTAGGGCTGCtgctatcactagtgatgccccaacactcctctgacacatgtgaagtcagccaccgcctcttttccaactgctgctgatggagcATCACCAGTGAGCCAGGACACTCAGAAGGAAGCACAGCAATCCATctttgatacatcagctgagagatgcctgtgctgacctaCATCACACAATGCCAATTGCACTTTTTCTCAgagtccggctgctgatggcaacaACATGATCTGGACATGATCTTCagtattacagtacattactaCCGCCTATTAACATACCATAGTTGTATACTATTCCATTAGGTACAACCTAGACAGTTCATTCAGGTTCTTATAGAGCCACAGTTTCAATCTCATAGACTGGTCTTAATGTAATGGATTTTTTGTAGGAGAATCGAGTCAGGTTGACTCTAGAGTAgaatctttctttctcttcaagataacagtacagagagtatGTAAACTTGGCCAGTACCACTGTACAGCAGATCTCCAGTGTCAGCATAATGGTGTAGGAAATCATCAAAGCCTTACATGAGGAAGCCCTGTCATCTTGAGAAGAAGAATGAAGTAAAGAGGATGGGTGCTGAGAGTATGCGGATCCAGAGCAAACAAAAGTCTTGGGTGTGATTGCGACTGTTCTGACTGTTGTCAGAAGAGATGTTGTTGTAGCTTCTGGAGTTGTAACTGTGGTTGGCATCACTGTGGTTGTTGCTGTAGTGGTGGGTGGTGTGGTTGTTGCTGTAGTGGTGGGTGGTGTGGTTGTTGCTGTAGTGGTGGGTGGTGTGGTTGTTGCTGTAGTGGTGGGTGGTGTGGTTGTTGCTGTAGTGGTGGGTGGTGTGGTTGTTGCTGTAGTGGTGGGTGGTGTAGTTGTTGTTGTAGTAGTGGTTGCTGTAGTTGTTGTTGTAGTGGTGGGTACTGTGGTTGTCACAATAGTAGTGGGTACTGTTGTTGGTACTGTGGTCATTGCtgtggttgttgctatggttgtGGGTGCTGTGGTTGTAACTGTAGTTGTGGGTGCTGTGGTTGTAACTGTAGTGGTGggtgttgtagttgtagtTGTAGTCTGAAGTAGAGTTGTAGGCCTAGTGGTTTCTGGGGTGGTGGTAGGTAGAGTTGTGGTTGGTGATAAGGTTGTGGTTGTGGGTGGTAAGGTTGTGGTTGTAATAGTGGTTGTTGTAGGCACAGTGGTTGTGACTGGAAGAGTTGTGGTTGTTGCTGTTGTAGTTGGTGGCAATGTTGTTGGAACAGTTGTTGTAGTTGTTGGCACAGTTGTTGTAGTTGGTGGCAGAGTTGTTGTCACAGTTGTTGTAGTTGGTGGGAGAGTTGTTGTAGTTGGTGGCAGAGTTGTGGGACATATGAGTTGATCTCCTTTTAATGAAAGAACAGACTGTGCTCTCAGATCCTCAGGGTTCTCACAAGTTATACTCTCTGGAGATCGTATTTTCCCCTCATTGTCTTTCATCCATGTGTAGAATGGCAGCAGGTTGCAATCACACTGCCATGGATTGTCATTCAAATACAACTTACTGAGCTTTGGTAGAGAATCGAAAGCATCCCCTGGAAGGTTGCTTATGTTATTTTTAGCCAGATTAAGTGTTAAAAGAGACTGTAGATGTGCAAAGTCATCTGATTTAACTGATTCAATGGAATTTTTCTGAAGATTAAGCTCTGAAAGTTTCTCAAGACCCTCAAAAAACTCTCCAGAGAGATGTGAAAATTGATTTGATGACAGGTCAAGcttctttatcttcttcagTGGGGCAAAGACCTTAGCAGGTAAACTTTTGAGATTATTGCTGTATAGACCAACTTCAGTAATTTTTTGAGTTTCACTAAACAGGACTGATGGGAGACTGGTGAGCTGGTTGTGATGCAGAGTTAAAGATTTGAGTGCAGAAAAGTCCACAAATAGCTCCGGTGGCAGTTCAGTCAAGAGATTAGAgtccaaaaaaagttttgtcaatttgtttttatgtgGGAACAAATCGGGTTGTATGTTTGTAATTCTGTTGCCATGTATAGCAATTTCCTTCAGATTCCGCAGATTATCAAATATTCCATCTGGCATAGATGTCAACTGGTTTTCATAAATTCTAAACACCTGCAGTTTCTTGAGGTTAGAGAAAAGGGCTGATGAGATGGAGATGAGTTTGTTCTTTGCAAGGTGAATTTCCTGAAGATTCTCCAACTGATCAAACGTTCCTTCGTCAATTGATGAAATCTCATTAATATGCAGATGCAGTTTCTCAAGAGCACTGAGACCATCAAAAAGCCCCTTTTCCAATCTTTGAATGTGGTTtgatttaagaattaaagtatTAAGACTGGGAAGATTCTTAAAAACTCCAACAGGCAGTGATGTTAGTTTAGTTCCTGAGATCTCAATGGTAGCCACCTTCTCTAAACCTTCAAAAGCACCTTCTTCTACAGATGACGTCGATGTACCAAGAAATTCCACTTTCTCCAGCTGAGGGTTTTTGGAGAATGCTCCATTTGGTATGACATCAATCTGACTACTAACAAAGAAGAGCTCTTTGATTCCATCTTTCAGTGTTTCTGGGATTGTTGTCACGTCCTTGTCATAGACATCTTG

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG:

id description
ko04640 Hematopoietic cell lineage

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157976 lncRNA upstream 120679 39150829 ~ 39151218 (+) True G116960
TU157973 lncRNA upstream 186997 39084679 ~ 39084900 (+) True G116957
TU157880 lncRNA upstream 288338 38980409 ~ 38983559 (+) True G116886
TU157860 lncRNA upstream 317086 38953227 ~ 38954811 (+) True G116869
TU157843 lncRNA upstream 643733 38626794 ~ 38628164 (+) True G116852
TU157997 lncRNA downstream 2149 39284222 ~ 39285631 (+) True G116978
TU157998 lncRNA downstream 3634 39285707 ~ 39287709 (+) True G116979
TU158011 lncRNA downstream 43470 39325543 ~ 39325769 (+) True G116985
TU158020 lncRNA downstream 71362 39353435 ~ 39353788 (+) True G116994
TU158035 lncRNA downstream 105441 39387514 ~ 39419793 (+) True G117006
XM_007249064.3 mRNA upstream 60074 39209814 ~ 39211823 (+) True hes1
XM_022675822.1 mRNA upstream 190786 39032127 ~ 39081111 (+) True opa1
XM_007249068.2 mRNA upstream 190786 39032127 ~ 39081111 (+) False opa1
XM_007249069.2 mRNA upstream 190786 39032127 ~ 39081111 (+) False opa1
XM_007249086.3 mRNA upstream 838040 38417049 ~ 38433857 (+) True cth
XM_022675824.1 mRNA downstream 235427 39517500 ~ 39594023 (+) True LOC103022251
XM_007249062.3 mRNA downstream 672400 39954473 ~ 40009536 (+) True LOC103028032
XM_022675826.1 mRNA downstream 941978 40224051 ~ 40259219 (+) True LOC103027818
XM_007258376.3 mRNA downstream 991313 40273386 ~ 40276489 (+) True LOC103040699
XM_007258375.3 mRNA downstream 1036685 40318758 ~ 40339674 (+) True LOC103040381
TU157374 other upstream 2160299 37100014 ~ 37111598 (+) False LOC103045245
XR_002650721.1 other upstream 2558013 36657392 ~ 36713884 (+) False LOC103044253
trnaf-gaa_2 other upstream 3023052 36248773 ~ 36248845 (+) True trnaf-gaa_2
TU156853 other upstream 3283837 35982119 ~ 35988060 (+) True G116103
TU156628 other upstream 3537538 35730653 ~ 35734359 (+) True G115931
TU158023 other downstream 76798 39358871 ~ 39359388 (+) True G116997
TU158258 other downstream 1517398 40799471 ~ 40803543 (+) False LOC103033994
TU158255 other downstream 1517498 40799571 ~ 40803543 (+) False LOC103033994
TU158846 other downstream 3069734 42351807 ~ 42355784 (+) True G117642
TU158848 other downstream 3069734 42351807 ~ 42355784 (+) False G117642

Expression Profile