RNA id: TU157998


Basic Information

Item Value
RNA id TU157998
length 1956
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G116979
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 39285707 ~ 39287709 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTATTTTCACagcaaatcaaataaattaatgataGTCCCTTGCACAGTGTTACAATACTGAACATTACATTTAATGATGTGCTGTGTCTATATACTTTTATAATTATCTACTAAAAGGACACTCCACACATTATATTAATAAGTAGTCATTTCCAAATctttgtacctttttttttaacaagtaaAACATGGCCAGTGTGCTGCCACGCAACAGTTTGTCAAATATTCTTAAGATGCTTTGCATTAGATAACTGAGTTTGTATGTGGATGATGGCCTAAGTCCTGACTGccttgtttgtttttcctcCAGCAGACAACAGAGATGATGACACTGATAATGACTACCGTACAGACTACAGCAATAATGATCAAATACATGTCTTTAGACATTGCTTCAGTCTCTTTGTGATCATTGCTGGTGTCCTCTCTTTTATCTGGAGATGATGTGGAGTTAGCAACAGGTGCAGCGGTGCTCCGTCTGGGTGGGGGGGTGTGAGGTCTTCGCCGCTTATCTGTAGGACTAACGGATTCGTCTTCAGAGGATTTCGAAGTGGGTGACGCAAGTAAATCAACATCATTGAGGTTTGTTATACTAACGTCTATCAAGTTTGAAGGACTAAAGCATGTAAGAGATGTGACGTTTTTGACTTTGTTTGAGTTCTTTCTTAGCCAGTCCCGAAGTGGTACAATGTCATGGTCACACCTCCAAGGATTTTCAGCAAGCACCACACTTTCAGCCCCAGTCAGTCCGTCTAAAAtctcttgttttaaatgtggtaGAGAGTTATTTTGAAGCTCCACTTGAAATAAGTTGGGGATGCCATCAAAAAGTTTCAAAGGAAGGTCAAGCAATCCTATTATTTTCCAGTGAGATGTTCACCAACTTAGGCAGGCCTCTAAAAACTCCTTCTTCAATGGTGGCTAATTGGTTGGTGTGTAAAGAAATTTCTTCCAAGCTTGTCAATCCATTGAAGGCACCAGGCGAGACACGGGAGAGCTGATTTCGGCTGAGCACCAAAAGACGTACATTAGTCAAATTGCTGAACGCGTTCTCCTCAAGCCGGGTCAACATATTGTCATACAGCCACAGGTCCTGGAGAGGCATGGGTCCAAAAGTTCCAGCAGGCAGACTCTGCAGCTGGTTGTCATAAAGTGATATCTGTCGCAGATTGGGAAGATTCAAGAAGATGCCGCCAGGAAGTGCAGACAATTGGTTATTGGAGAGATAGAGCTTTTGCAGCTTCTGTTGATGTGTGAAAAGGTCTGCTGGTAAGTGTGTGATCGCATTATTCTGCAGATGCAAAGCCTCAAGGTTAACCAGGTCCTTAAAGGCATTGTCTGGAAGCTCTTTTAGACCGTTCTGCTGGAGGAACAAGACTTTAAGCTTGCTGAGCCCATGAAAAGTCCCTTTGCCCAGTTCCAGAATGTTGTTTCTCTGCAACTGAAGCTGCTCCAAATGAAATAGACCCTGAAATGCATTCTCTGGAATAGACGTGAGTTTGTTTCTGCTTAGGTCTAAGACCTTCAAAACTTGAAGAGGACTTagcagagatgaagagatgTCATTTAGTTTGTTGTTGCTCAACGTGAGAGATGTGAGCAACTGCAAATTCTGAAACAAGTTATCTGGTAGCTTGACTAAATCAGTTCCTGTGAACCCCAGGGCGATTAGGTTGAAGGTGCTGTCAAACGTGTGGGGCTGCACGTCACTTAGTCTTGAATCCTTGACAGCAAATATTGTGAGAGATTCAGAAAATGCATGAAAGTCAGCAGGTTTCAGCGAGGAAATGTTGCTGAATGAAATATACAGAGTACTCGTGGTTGAGGGGATGGCAGATGGAAACTCTTGAATTTCATGGCCTTGACATAGAATTTTGTTGCTTCTGCACTGGCACTGCAGTGGGCATCCCCAGACAACAGCATTAACAGCACAAACACCAAGAATGATGTAAAGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157997 lncRNA upstream 76 39284222 ~ 39285631 (+) True G116978
TU157991 lncRNA upstream 3634 39271897 ~ 39282073 (+) True G116975
TU157976 lncRNA upstream 134489 39150829 ~ 39151218 (+) True G116960
TU157973 lncRNA upstream 200807 39084679 ~ 39084900 (+) True G116957
TU157880 lncRNA upstream 302148 38980409 ~ 38983559 (+) True G116886
TU158011 lncRNA downstream 37834 39325543 ~ 39325769 (+) True G116985
TU158020 lncRNA downstream 65726 39353435 ~ 39353788 (+) True G116994
TU158035 lncRNA downstream 99805 39387514 ~ 39419793 (+) True G117006
TU158037 lncRNA downstream 141424 39429133 ~ 39429572 (+) True G117008
TU158056 lncRNA downstream 210090 39497799 ~ 39498358 (+) True G117025
XM_007249064.3 mRNA upstream 73884 39209814 ~ 39211823 (+) True hes1
XM_022675822.1 mRNA upstream 204596 39032127 ~ 39081111 (+) True opa1
XM_007249068.2 mRNA upstream 204596 39032127 ~ 39081111 (+) False opa1
XM_007249069.2 mRNA upstream 204596 39032127 ~ 39081111 (+) False opa1
XM_007249086.3 mRNA upstream 851850 38417049 ~ 38433857 (+) True cth
XM_022675824.1 mRNA downstream 229791 39517500 ~ 39594023 (+) True LOC103022251
XM_007249062.3 mRNA downstream 666764 39954473 ~ 40009536 (+) True LOC103028032
XM_022675826.1 mRNA downstream 936342 40224051 ~ 40259219 (+) True LOC103027818
XM_007258376.3 mRNA downstream 985677 40273386 ~ 40276489 (+) True LOC103040699
XM_007258375.3 mRNA downstream 1031049 40318758 ~ 40339674 (+) True LOC103040381
TU157374 other upstream 2174109 37100014 ~ 37111598 (+) False LOC103045245
XR_002650721.1 other upstream 2571823 36657392 ~ 36713884 (+) False LOC103044253
trnaf-gaa_2 other upstream 3036862 36248773 ~ 36248845 (+) True trnaf-gaa_2
TU156853 other upstream 3297647 35982119 ~ 35988060 (+) True G116103
TU156628 other upstream 3551348 35730653 ~ 35734359 (+) True G115931
TU158023 other downstream 71162 39358871 ~ 39359388 (+) True G116997
TU158258 other downstream 1511762 40799471 ~ 40803543 (+) False LOC103033994
TU158255 other downstream 1511862 40799571 ~ 40803543 (+) False LOC103033994
TU158846 other downstream 3064098 42351807 ~ 42355784 (+) True G117642
TU158848 other downstream 3064098 42351807 ~ 42355784 (+) False G117642

Expression Profile