RNA id: TU158020


Basic Information

Item Value
RNA id TU158020
length 354
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G116994
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 39353435 ~ 39353788 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ccgcaagaccctccagcgtattgtgaggacagctgagaggatcatcggcgtctctctcccctccatcacggacatttacaccacccgcagcatccgcaaagcaaccagcattgtgaatgaccccactcatccctcacacgaactgttctccctcctgccttcgggaagaaggtaccgcagcatccggtccagcacgaccagattctgcaacagcttctacccccaagccatcagactccttaactgcagagactgaactgatggtttttctgtacatgcacacacactcttaccccacttaccccagaaaatggaaagcactaaaaaccctactacctcactggactctattgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158011 lncRNA upstream 27666 39325543 ~ 39325769 (+) True G116985
TU157998 lncRNA upstream 65726 39285707 ~ 39287709 (+) True G116979
TU157997 lncRNA upstream 67804 39284222 ~ 39285631 (+) True G116978
TU157991 lncRNA upstream 71362 39271897 ~ 39282073 (+) True G116975
TU157976 lncRNA upstream 202217 39150829 ~ 39151218 (+) True G116960
TU158035 lncRNA downstream 33726 39387514 ~ 39419793 (+) True G117006
TU158037 lncRNA downstream 75345 39429133 ~ 39429572 (+) True G117008
TU158056 lncRNA downstream 144011 39497799 ~ 39498358 (+) True G117025
TU158107 lncRNA downstream 485224 39839012 ~ 39847835 (+) True G117071
TU158150 lncRNA downstream 683512 40037300 ~ 40037531 (+) True G117102
XM_007249064.3 mRNA upstream 141612 39209814 ~ 39211823 (+) True hes1
XM_022675822.1 mRNA upstream 272324 39032127 ~ 39081111 (+) True opa1
XM_007249068.2 mRNA upstream 272324 39032127 ~ 39081111 (+) False opa1
XM_007249069.2 mRNA upstream 272324 39032127 ~ 39081111 (+) False opa1
XM_007249086.3 mRNA upstream 919578 38417049 ~ 38433857 (+) True cth
XM_022675824.1 mRNA downstream 163712 39517500 ~ 39594023 (+) True LOC103022251
XM_007249062.3 mRNA downstream 600685 39954473 ~ 40009536 (+) True LOC103028032
XM_022675826.1 mRNA downstream 870263 40224051 ~ 40259219 (+) True LOC103027818
XM_007258376.3 mRNA downstream 919598 40273386 ~ 40276489 (+) True LOC103040699
XM_007258375.3 mRNA downstream 964970 40318758 ~ 40339674 (+) True LOC103040381
TU157374 other upstream 2241837 37100014 ~ 37111598 (+) False LOC103045245
XR_002650721.1 other upstream 2639551 36657392 ~ 36713884 (+) False LOC103044253
trnaf-gaa_2 other upstream 3104590 36248773 ~ 36248845 (+) True trnaf-gaa_2
TU156853 other upstream 3365375 35982119 ~ 35988060 (+) True G116103
TU156628 other upstream 3619076 35730653 ~ 35734359 (+) True G115931
TU158023 other downstream 5083 39358871 ~ 39359388 (+) True G116997
TU158258 other downstream 1445683 40799471 ~ 40803543 (+) False LOC103033994
TU158255 other downstream 1445783 40799571 ~ 40803543 (+) False LOC103033994
TU158846 other downstream 2998019 42351807 ~ 42355784 (+) True G117642
TU158848 other downstream 2998019 42351807 ~ 42355784 (+) False G117642

Expression Profile