RNA id: TU158037


Basic Information

Item Value
RNA id TU158037
length 440
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G117008
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 39429133 ~ 39429572 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atgctgcatatgtacaggacatacatagaattgaaattacgttactctccttcccaattttacagcaagtacagataatggataataaagaaaaaggggagacactatgtgtacaatacagcagcagggacacagacatacatgagacagaacaaggtgcagtagtggtgggggtgaaatagatatataaatagaaataaaaagaaataaaaatataatctaaatgagtgggagacactatatgtacaatacaacaaaaacacaatagacatttgtgagacagaagataatagtgcaatattaatggtgattaagatcaagtgacaatataaatagaacccgtataacagtagtgcaatgttgtatctagcttaaggctggtaaagttcttaaagttcccagttcttggggaattaaagtgtgtatgacagtgcaGCGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158035 lncRNA upstream 9340 39387514 ~ 39419793 (+) True G117006
TU158020 lncRNA upstream 75345 39353435 ~ 39353788 (+) True G116994
TU158011 lncRNA upstream 103364 39325543 ~ 39325769 (+) True G116985
TU157998 lncRNA upstream 141424 39285707 ~ 39287709 (+) True G116979
TU157997 lncRNA upstream 143502 39284222 ~ 39285631 (+) True G116978
TU158056 lncRNA downstream 68227 39497799 ~ 39498358 (+) True G117025
TU158107 lncRNA downstream 409440 39839012 ~ 39847835 (+) True G117071
TU158150 lncRNA downstream 607728 40037300 ~ 40037531 (+) True G117102
TU158156 lncRNA downstream 662023 40091595 ~ 40091844 (+) True G117108
TU158160 lncRNA downstream 699520 40129092 ~ 40136727 (+) True G117111
XM_007249064.3 mRNA upstream 217310 39209814 ~ 39211823 (+) True hes1
XM_022675822.1 mRNA upstream 348022 39032127 ~ 39081111 (+) True opa1
XM_007249068.2 mRNA upstream 348022 39032127 ~ 39081111 (+) False opa1
XM_007249069.2 mRNA upstream 348022 39032127 ~ 39081111 (+) False opa1
XM_007249086.3 mRNA upstream 995276 38417049 ~ 38433857 (+) True cth
XM_022675824.1 mRNA downstream 87928 39517500 ~ 39594023 (+) True LOC103022251
XM_007249062.3 mRNA downstream 524901 39954473 ~ 40009536 (+) True LOC103028032
XM_022675826.1 mRNA downstream 794479 40224051 ~ 40259219 (+) True LOC103027818
XM_007258376.3 mRNA downstream 843814 40273386 ~ 40276489 (+) True LOC103040699
XM_007258375.3 mRNA downstream 889186 40318758 ~ 40339674 (+) True LOC103040381
TU158023 other upstream 69745 39358871 ~ 39359388 (+) True G116997
TU157374 other upstream 2317535 37100014 ~ 37111598 (+) False LOC103045245
XR_002650721.1 other upstream 2715249 36657392 ~ 36713884 (+) False LOC103044253
trnaf-gaa_2 other upstream 3180288 36248773 ~ 36248845 (+) True trnaf-gaa_2
TU156853 other upstream 3441073 35982119 ~ 35988060 (+) True G116103
TU158258 other downstream 1369899 40799471 ~ 40803543 (+) False LOC103033994
TU158255 other downstream 1369999 40799571 ~ 40803543 (+) False LOC103033994
TU158846 other downstream 2922235 42351807 ~ 42355784 (+) True G117642
TU158848 other downstream 2922235 42351807 ~ 42355784 (+) False G117642

Expression Profile