RNA id: TU158258


Basic Information

Item Value
RNA id TU158258
length 648
RNA type TUCP
GC content 0.44
exon number 4
gene id LOC103033994
representative False

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 40799471 ~ 40808545 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTAATATATCCttcataaacaaaatactaagcTTCAAACGTGTGACAGACATATTTTGAGCTAGTTTTAAGTTTCTGAAGGGCGGGTTTTATGCTAACTTTCAGCTGGATATTtctgttggacctggcaaccctgtctCTTAGTAATAATCAATAATGGCGGAGGTAAGAAACAAAGCGCAGTTTCTGTTAcagtaaacactgtaaaattcACAGCTCTCTGATTTCTGCTCTTCACAGCTCAGGGGTTTATTTTTCCGTAATCTTATTAAAGTCAGGTTTATTCCAAATCTAATAGACGCTGTTTGCGCGCTCTGTGATAACGCTGCCCTTTCCTTAAGTGGTGCACCTACACAAGGGTCCTCAGCCATTCGGGATGAGGATGCTGACTTTGAGCCGTCTGCAGACATGCTTGTTCATGACTTTGACGATGAGCAGACGCTTGAGGAGGAGGAGATGCTGCAAGGAGAGACCAACTTCAGTTCTGAGATAGACGACCTCACTCGAGAAGGGGAGATACCCATCCATGAGCTGCTCAAGATGTACGGCTATGGTGGGGAAGATTCTGCAGAAGAAGAGGATGAAGGCACAGAAGAGCAGGATGTTCCTGAAAGTGACCAGAAGAGCAAAGCTCAAGGAAAAGTCAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158223 lncRNA upstream 169327 40626197 ~ 40630144 (+) False G117156
TU158222 lncRNA upstream 169392 40624332 ~ 40630079 (+) True G117156
TU158225 lncRNA upstream 173363 40624010 ~ 40626108 (+) False G117156
TU158220 lncRNA upstream 173363 40624332 ~ 40626108 (+) False G117156
TU158217 lncRNA upstream 178705 40619568 ~ 40620766 (+) True G117154
TU158278 lncRNA downstream 13633 40817176 ~ 40821330 (+) True G117183
TU158420 lncRNA downstream 287958 41091501 ~ 41091992 (+) True G117299
TU158430 lncRNA downstream 355644 41159187 ~ 41159477 (+) False fam183a
TU158434 lncRNA downstream 360266 41163809 ~ 41164660 (+) False fam183a
TU158437 lncRNA downstream 360266 41163809 ~ 41166159 (+) True fam183a
XM_007258350.3 mRNA upstream 1535 40786228 ~ 40797936 (+) True slc35d1
XM_022675833.1 mRNA upstream 16270 40777645 ~ 40783201 (+) True LOC103042225
XM_007258381.3 mRNA upstream 16270 40777645 ~ 40783201 (+) False LOC103042225
XM_022675834.1 mRNA upstream 16270 40777668 ~ 40783201 (+) False LOC103042225
XM_015608135.2 mRNA upstream 16270 40779923 ~ 40783201 (+) False LOC103042225
XM_007258379.3 mRNA downstream 317583 41121126 ~ 41125571 (+) True LOC103041612
XM_022675128.1 mRNA downstream 355661 41159204 ~ 41164229 (+) False fam183a
XM_007258348.3 mRNA downstream 390559 41194102 ~ 41216267 (+) True tmem125
XM_022675841.1 mRNA downstream 479308 41282851 ~ 41305229 (+) True tie1
XM_022675842.1 mRNA downstream 479308 41282851 ~ 41305229 (+) False tie1
TU158023 other upstream 1440083 39358871 ~ 39359388 (+) True G116997
TU157374 other upstream 3687873 37100014 ~ 37111598 (+) False LOC103045245
XR_002650721.1 other upstream 4085587 36657392 ~ 36713884 (+) False LOC103044253
trnaf-gaa_2 other upstream 4550626 36248773 ~ 36248845 (+) True trnaf-gaa_2
TU156853 other upstream 4811411 35982119 ~ 35988060 (+) True G116103
TU158846 other downstream 1548264 42351807 ~ 42355784 (+) True G117642
TU158848 other downstream 1548264 42351807 ~ 42355784 (+) False G117642

Expression Profile