RNA id: TU158304


Basic Information

Item Value
RNA id TU158304
length 2656
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G117207
representative False

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 40337761 ~ 40340478 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTGATCAGTGCAGACTTGTTTTGATGACACATCACTTCATACTCTAGAATATGATATTTTTCTAGTATGACTCTAAATAGATAACGCAGGTGAGAAAAGAAAGGAACAAAGGAACAAGCTCTCCTCTTCATTCTCTGCAACTTGTGTATTCACAGACAAGCAATACTGAATAACTTAAAATCAAATAGTAGTAAATTATTtacatatgaaaaataaatacatcttCAGATCTTTAATGGTATTTATGTGATCAGCTACAACAGTacatgcacatatatatatatatactgtatacgtTTAAGCAGCTTTGCTATAAATGACAGGTACTGAATAAGCCCTTAATTATAGTTAAATATAGGCATTAGGTGTGAACCTTtctatttaactttaaaattgatttaactttttaattggATACAATTTAACTTTTTCTCTTTAGTCTCCTTTGCAGATGCTTGTCAGATCTTTAAACTGGACTTGTTTGTTCAAATTTGGATTTAATCTTAAGGTAATAACTAATTTGAATAACCATAGATTGTTCTACTTCTGACCTGCAGTGTTCTAATACTTTTGGTTCTGTTGGGTAACTGTAAGGACTTATAAAGCACCTgtcattgtttattgtttataatcATGTATATAataatatatatatataaagaaagggAAACAGATATACCGGTagatatactataatatatagtGAACAATGATAggtgaaaaaagagaaacataCAATAgtagtatatatgtatgtggtgggatcacaaacacacactttaatatATCATTTTAGGGAAATCACTTTAGGGCATATTACTAATACACAACACAACGTAATTAAATCATGTTTAAGACAACATGAAAAGTCTCAGGACTGTTTTAAAGTAAAGGAACTGCTTAGGAGCAGCATAAGAGCATGCAATATTTGAATGGAAATTGTAGATGGTAACATACACTCATGCTGGTACAATGCTTTACGTTTTTAGTGtcatataatattgtaatataattgcACAGTAAATGTTTCAAATATGTTTTGTATAATTTGTGCATAAACTCATGCTAATTCTTTTTGAATGGTGATCGTTATCGTTATTGTGTTGGGGTCAAACACATCCATtaatataggaaaaaaaaaaaaaggaaataatttTAGGGCTTATTACTAatacacacaatataatatGATGATGTCAACATGTCTGTGTTctgttttaaagtaaatgagCTGCTTAAGAGCAGCATAAGGGCATGCAATAATTTAATGGAAATTACACTGTATATCTTAGCATACTTACTCATGCTGGTAAATGCTTTTagtctgttattattataattacgcCTTTATAATTGCAGagtaaatgtttcagatttgtATAATTTGTATATAAACTCTGGGCTAATTCTTTTAAGTGGTGATAATTATTGGATGTACTCATCAGGGGGGCCttagggatgtttttttttcttttcttttccactGAAATCCAAACAAACGGTTGGAGAAAATTTGCGTTTGACATCCCTTGGGAAAGCTGTCCCTCTGGCTGAAGAAGACACTGTTTTCCAAAGCTTTATGAAGATCCACTCCTACTTGATATTCCCATCTTAGCAACTTACAATGTAGCTGTTATATTGCAACAAGCCTCCTCTCTGGCATTTCCCAGGGACCCAGTGCATTTAAACacgtctctttctttctttctcttactgTGACTGATGGTGGGCCTTTCAAGATTAATGGCGACACAAACCAGCCCCCCCTTCCCAAACCCCTACctcccaccccccaccccttcACTGTGCTATACCATATGACTGTTAATATTTGTGTGGACGtttccaggaaaaaaaaaagccctcgCCGTTAGCTTCCCCCTCCCCACACTGTCCTGTTTCTACTCTCCAAGCAGTCCATGAACTCGCTGCTCAGAAACTTCTACTAATTGCACCTTAGAGGTCAGATTACCCTCTTGAAAAACATGAGCCACTTGTCGTATTTCCAAGAAAAAGCACGGATTACAAGAGGGGATCAGTCTGGCtatgtttttctcctcttttattTAGTCTTGAAGGGAAAAATAGAGAAGAATATCATTCTAATTAACAGACTGTGCATTCCAAACTGTACCCAATTAATAGCATCCTCTATTAGCTTATTTGCATggttcatcatcatcacatgtTTTTGATTAATGACTAATAGTAGAATTGCCTTTTTTCAGTCATCATAAAGTAGTTATGATTATGAAAAAGACAGTTATTAGCAAGGGAATAGAGAGCTGCAGGGAGACTcgattttttgtatttttttccaatttcaatATCTTTCAAATCTTTCTAACAGATTGTCATGTTTTTACACAATCGCTTCATATAAAGGACTTTAGTTGCCTGAGGCCCGTAAATGAGGTGCTGGGAGCTACATAGATTAAACATCGATTGATGCTGGTTGGTCTGTTTTGTCTCCCTGCAGCTGAATGACCCCGTTTACTTGATCAGTTCTTGGTATTGCTCAGATCTGAGAAAGCGACCAAAGGAGTCTTTCTCCATCAGGGTGTAGATGCGGCTTTGGGCCAAATCGAAGGTGGTTGGGCTGAGATCCACCAGGTTCCTCAGGGTCACGTCTTTGGTAAAGTGGTCAATGTTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158169 lncRNA downstream 167556 40169837 ~ 40170205 (-) True G117120
TU158164 lncRNA downstream 201075 40129216 ~ 40136686 (-) True G117115
TU158155 lncRNA downstream 265844 40071596 ~ 40071917 (-) True G117107
TU158151 lncRNA downstream 299283 40038117 ~ 40038478 (-) True G117103
TU158147 lncRNA downstream 308814 40005850 ~ 40028947 (-) True G117100
TU158317 lncRNA upstream 77793 40418271 ~ 40512239 (-) True G117217
TU158333 lncRNA upstream 254574 40595052 ~ 40600261 (-) True G117232
TU158336 lncRNA upstream 273721 40614199 ~ 40614416 (-) True G117235
TU158323 lncRNA upstream 283859 40624337 ~ 40626142 (-) True G117223
TU158341 lncRNA upstream 302470 40642948 ~ 40650103 (-) True G117239
XM_007249063.3 mRNA downstream 1046733 39284217 ~ 39291028 (-) True LOC103028549
XM_022675823.1 mRNA downstream 1054846 39271790 ~ 39282915 (-) True LOC111193786
XM_022675821.1 mRNA downstream 1312599 39013762 ~ 39025162 (-) False lnp1
XM_007258374.3 mRNA upstream 19841 40360319 ~ 40363960 (-) True LOC103040080
XM_007258359.3 mRNA upstream 279004 40619482 ~ 40636688 (-) True uhmk1
XM_022675829.1 mRNA upstream 279004 40619482 ~ 40636685 (-) False uhmk1
XM_022675830.1 mRNA upstream 279004 40619482 ~ 40636684 (-) False uhmk1
XM_007258358.3 mRNA upstream 281675 40622153 ~ 40636689 (-) False uhmk1
TU157786 other downstream 1953163 38381270 ~ 38384598 (-) True G116805
trnaq-uug_2 other downstream 3244691 37092999 ~ 37093070 (-) True trnaq-uug_2
TU157486 other downstream 3291973 37041361 ~ 37045788 (-) True G116581
XR_001518677.2 other downstream 3306401 37023391 ~ 37031360 (-) False LOC103023810
TU156955 other downstream 4275832 36056563 ~ 36061929 (-) True LOC103028059
XR_002650725.1 other upstream 19923 40360401 ~ 40363960 (-) False LOC103040080
XR_002650728.1 other upstream 1241355 41581833 ~ 41582017 (-) True LOC111193790

Expression Profile