RNA id: XM_007258353.3


Basic Information

Item Value
RNA id XM_007258353.3
length 6193
RNA type mRNA
GC content 0.41
exon number 16
gene id LOC103034527
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 40731296 ~ 40769682 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGGGAAAGTGGACGAGCGCGCACGCACGAGCAGCGATAAGTATGAGAAAGCGGGGTGAGTTCAGCTGAAGGATTTTTATCTCGACTTTTTCGACCTCAGCGTGGAATAAACCGTCTTCAGTGTCTTCAAAACTATGGACAGATGATCGGCACTCGGCATGCTAGAAGCACAGCTGCTCCTGGAAAAAGTGGGTTCCATGCCTCTTAAATGCAGTATTTGGTCAAACTTCATTTTTCTGCTGGTCTTGGCTACTGCAACACCTGCCAACAGGGCAGGGCAAGACGACAAAATATGCACAATCCACTCAAGCAAGGAGGTCCTCATGGGCTCCAGCTTCCAGATCTACTGCGTCTtcaaaaatgaatgcaacaaaATCATCTACCGAGACAATGTGCCTTTGCCTTACAACAGCTCTAATCTAACTGCTGTGATGAACATTGTGAAATTGACGCAGGCCACCACCTTCACCTGCAGGTGCAAGGACCGTCCAGAGCCCTGTGGGATGGACATCACTCCAGGGTATCCACCCCAAGCCCCACAGAACCTTTCGTGTGTGCAAGAAGGAGAACTTGGCAAGGTGAACTGCACATGGAAAACAGGATTGGAAACACACATCCAAACCACATCCCATCTGTGGGTGCAAGGGGATCCTCCTGTAAATTATACAAGTAAAACCGCTTCAACTTTGTTTGCTGTTCCATCCACACAGACTAAACTTACAGTTCGGGCCACAGCCATCAACAGTCTGGGCTCAGCTACTTCGGCTGCACTCACCTTCATGCTCAATGACATAGtaaagCCTTTAAAGCCGAATATTGTGAAAGTTAAATGCAACTCAAGAGATTGCCAACTTTACACagacaaaagacaaaacatTCATCTGGTGGACATCAGGTACAAAACGGATCAGGAGAGCTGGAATTCTGCTTCGTTTAATCATGCAAATTCAAGCACATACTGGAACATAACGTCGCTGACTCCATACAGCCTGTATACATTCCAGGTCAGGTGGAAACTTGGCCCCTCAAGAGGGCTGTGGAGTGAGTGGAGTGAGGCTAAGGAAATGACTGATGAAGAAGCTCCTGCTGTAATGGTTGATGCTTGGTATTTTGGagacagcaaaaacacacatttattgtGGAAGGAGCTGAGCAAATTGGAAGCAAGTGGAAAAATTCTGGGGTATAATGTGACTGTGGTggatgaaaggaaaaaaatcagcAGTACCTTCATCAAACATCCTTGCAGAAATTACAGTGTGCGGTGCTCCATCTGTACTGTGTCCATCTTTGCCAAAAACTCAAAGGGGCACTCTCCGACCAGGCGTATTCAGCTGCAGCCTATAGGTTCACTTCGATATACTGTTTCACACCAGATTCTGAATGACTCCTCTATCGCCCTCTCCTGGCAGAGACCTAACAATGCACCGGAAGAGTACCTGGTGGAGTGGTACCCTGTAGAACGTAAAGAGCAGCTACAGTGGATCAGAGTGGAGCGCCACCTGCACACCACAAATATTACAGGTTTGCAGCCTGCTAAATGCTATGATGTTGCAGTAGTTTATCTGTTCTCATCTGGGACAAGAAAGGTTGTCTTCAGTGGTCTCTCAACACGGCAATCAGTTCCACAACAGGGCCCCGAATGTGATGCCACAGTGAAAAATTACAGTGTGGAGGTAAAATGGGAAGACATTCCCCTAGAGAGGAGAGGTGGCTGTCTGACAAATTACACCATCTACCTGCGGGATTCAGGGGACAAAATTAAACGTTATAGTATCGGTAAGCCCTCCGAGAAAAAGTTCACTATTAGTGACCTTTCCCCGGGACAGCAATACAAGCTCTGGGTCACAGCCTGGACCAAAGCAGGAGAGGGACCCAAAGGAAGAGAGCGCAACATTGCAACACCACCAGAAATGATGTCGGCTGAAAAACCCATGGCTCTGGTTGTGTCAGTTGGTGGTGTTGTTTTCCTGGCCTGTCTTTTTTTCCTTTGCATCTGTCACTTTTCGTCAGTGCACAGAAGGTTTTCACGCTGTTGTCACTGCCTAATGCCTAGCATTGTTCCAGATCCTGCCAATAGCAAATGGGCAAAAGAGTGTGCAAGTGAAAAgGGTGAGATGAAACTGCAGCTGTACCTCAGTGACTCCAGTATGAGTGAGGAGGAGCCAGATACTGTGGAAGTGCAGGAACTTCCACAGGAAAAATTCAAGCAAGAAAACATCCCCAAAGATGGAACATATCACTCAGTCAGCAACCTCAGCGTGCAAGAGCAGGAGCTGGAACAAGAACAGGAACAGAAGCACCACATTCCATCATCACTCTATCAGGCTACCACAACCAGCTCATACCTCAAAAGCTTATCTCATGAGTCGGGCTCCTCCGACACCACTCAGGCCTCCAGGGGCACCGATATGACTGTGGACTACATTTCTTCTCATGGTGTGTTGAGtggagatgaagatgaagaagaagttGATGATGAAAACTTTTTTCCCTGTCCAACGAGTCCTTTTCTGTCCCCTCTGATGTCTATTGGAGGAAAATTGACTCTGGACACAGTAAAAATAGACTGCAGTGATTTCTTGGATTTCACGTGAAGTTATTTTTCTTCAGTGTAAACCACTAAACTGATCATCTACTGACTGATGTGTGTCTGTAATGTCTTTACTAGAGCAGGGTATCACCAGTAATTTTTCCAAATCGACTTGATTAGTTTTAGAGTTGATTTATATGCTCGATATTTCAGTTAAAATAACAAGGTTGGTTAAAACAAACTtaccaatctaaaaaaaaaaatcttacacaTTGGCCCCACCACTTAGCCCTACTCCTGTGTTTTGCCTGTGAACGCATAGGGATAGGAAGTTCCAATTCTTGTTAGGGTAGAGGGGTAGGGGGAAGTGTTAGGGTTACAAACTGAGGTTTGACAGAGGCACACTTCAAAAAgagtacttaaaaaaacaagtattttccttttaaacaaattatgattattaataGCTATATAACCATAGTGTAATATGTAGTTTCAATACAATGTCTCATGgcaattttcttcataacaagcatacaaAATTGTTAGTAGTTCATCTCaatagctaaactagctaactttcctgttccaccttaaggaatggacaatagtAATAAAATGCTGCACCACATGTCCCCTCTCTGAtgacatacaatgccctaaagttaacttcAACCTGCAGACCACTGCTTGTGGCCTGGTAATGAAGcagtataaattatatattatttattggcAAATGTCAAAcccttgaagggttgtcccaattcttatgGGAGGATTTCACCACTTCCTCTTGTAACTTTTCCAATGGGAAGAATTACACTCAAAGACAGGGGTTAgaggtacaaaagagaaatgggactGGGCTTTAGTGTTGGGGCTTTAATAAatcaagtaaaaacaaaattacaaagatTGCCACTTGGAATCATTaaacaattagccttgctctctgaGTAGTAGATGGTACTTCTTGCCATCTTCCTGCCAGCTTGCACAGGCAGCTGTTGTATTGAAGGTGGAAAAGCACACTTTCTGCAAAAATATACACGTTTATATGATTCAATGTTAGAGCATTTAGATTTTTGTAACTCAGCCTTATTTTTTACACATCATAATCGAATGTTTTTATCAGCCAAGATGACACCATTTTTTATCCAGTATCTTAATGCTTTAAAGTGAATGTTTCAAACTAAGCCACTGCAACACTAGCAAAACACTTCAGTATAAACCTACACTGTTTCATACTGTCATACTTTACATTGAGAAGGCAAGAAGACTGTATTTCATCATCCCAGAATAATCCATGCTGTGAATCACATCATGGTTTGGCTTGTAAATTAAGACCAATGTACCTCagttgtgttttattgtattgtaaattGTACATATTAGATTAAAATAACAGGTTTGTTATTGGTTCTGTGAATTCagcgtttttattttattttatttttttgctttttaggaAGTGCTGCTGCTTAAATGAGTTAAAAGTTATGGACTGTGAAAAACATGTATGCATAGACACTTGCTAAAATATTTAGTGATAAACTTTTATCATCAAAAGAATATTCAGTTACAATACAAACTTTAAACACCCATGACCAACATGATAGTTAATGGAAAGGGGACCCAAATTATTTGAGATGGAGCAAAACTTTATGGGTGCCAGATGCGTGGTAGATTCCATTTCCAAAGTAAGTAAAGTTAATTAATATTCATTGATTCACAGTGCCGTGTGTATCTCCCAGATCATAAATCTAATTGTTCCTGAATAGGCGATCGGACACATTTTATAATCACTCTTGCTGTTTGAAGGATTTCTTGCAAAATGCACATTTAGTTGCAAGATATTCCTGGATTGACTGATGCAGATTTTCAGTAATGCTAACGTCAAAGGATGGTGCAAGCTATCAAAATTTCTTGCATTAATACAAGTACTTCTTAGTGATTTTGTATCATTGTCTGAGATAGAAGTAAACTCCAGCATTGTTTTATGTACCCAtggatatgttttttataacaCTGGCTGCCACATACCCCATGCTTAACACAGTTGGCAAGGGTTGCTTTGCCCGTCTAGCCAGCATGCAAGCAGTTTTAGCAGAGAGCTTTGACTTGctgtaataatgaataaaaggtACTGTCAGTGAGGAGTAAACTCATGAGAACTTGGTAGCTTCTGCTTTGAGCTATTTTGGGCATGATGACCTTAAGCTCAAGCAGCTGCCACAGGAGTACTCATCCTAATAGCATAACCATCTTTACCATTAAACAGCCTCCCATACCCAACCCATCAAGAGGTTATGATGTTTGAGTCAGTAAATCTGTGACCCTTTTCTAATAGCTCTTTATCCCATTAACATAGGCTGCATCGGTCAATGTATATGGCACcttttatatacacacaatggCAAGAAAATTCCCATTACATGTATAAAAATACATCATACAACAATCGGGCCAgcctttaaaatattgtttccTAATTACATGCAGTTTGAGTACTCCAACTGTCGAAAAGTACCAACCACCCTGGCTGAATCATGAAAAATAAATTTAGTCTAAGTTCAAGGGTTTTGACCCAGGACCAAACCTTCCCCTTCATAATTAATTGAGTAATGGTAAGATTAGTGCTGATATTCTGTACATGTTGAAAACCTCTCATTAAGTTCACACACAACCACTCAATATGAATAGACCATCTTTTAATTATGGACAGAGGTCTGAATAATAGCAGGGTTAGAATTCACACATTTTCATAGCACACAGTTGTTCCACATTGAACAACTAGTATTTCTTTCAGGACATCTACGCAGTAGTGCTGTTCTACAAAGCAATGGGGCAGAAAGTGAAATATtgaaattaaaactgatttaaatacaGACtgctgtattaaaatattaacttaTTCATATTGGTATCAGTAAACAGGAGTGCACAGTGTAAACTCgacttaaaaaaaggaaaaaactccTAGGGCATTAAATGAGTGCATTATTATCCTCAGAGCAACCTGAATATTGTGAATAGAAACCACTCATAATGGTCATTTTACAAACATCACATTTGAGATATATGACTACTCTTTTCAGAGGATTATCAATAGCCATGATGAAGGTATAATCAAATATTTTGGCATCAAGCTACAAATTAAATTTCTTGTTACTTCATTCAAGACATCATAATCGAATCTGTTAAAGGCCTACTGCAGGGTTCACAAACCAGGTTCCTTCCAAGCCAAAGTCCTGCAGAGTTTAGCACTTCTAACCAGAGTTCAACTtacaaagaaagacaaaaaagaatgcTAACCTCTGTATTACTCTGGCCAAACACACAGCCTACCGTATACACAGGGACTTCAAATCTCGCTCCAAAATgtacacaacattttaaagaCATAACACTTTAAAGTCCGGTATTCTGAGCAGACACCTGTGAGTGATCCCtaaggagaggaagagagtgtgTCTAAGGCATAAGAAGAAAGCAAGCCAAGGGCCACCACAAGCCAACTGATGCACTCTTCACACCTATTTGGAAACGCATATTTTCAAGCAGCAGTACAAAAAGTATTCATGAAGAATGCATaacctctgaaaaaaaatactgtatgaaAACATCCCTGCTACCTCATACTGAATACAAAACCTCT

Function

GO: NA

KEGG:

id description
K05064 IL12RB2; interleukin 12 receptor beta-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650726.1 lncRNA downstream 10478 40717856 ~ 40721125 (-) True LOC111193788
TU158362 lncRNA downstream 21811 40707782 ~ 40709792 (-) True G117253
TU158346 lncRNA downstream 77828 40653051 ~ 40653775 (-) True G117240
TU158341 lncRNA downstream 81500 40642948 ~ 40650103 (-) True G117239
TU158323 lncRNA downstream 105461 40624337 ~ 40626142 (-) True G117223
TU158390 lncRNA upstream 36919 40786221 ~ 40786527 (-) True G117274
TU158392 lncRNA upstream 43453 40792755 ~ 40795804 (-) True G117276
TU158393 lncRNA upstream 46610 40795912 ~ 40797819 (-) True G117277
TU158398 lncRNA upstream 50297 40799599 ~ 40802426 (-) True G117278
TU158379 lncRNA upstream 66831 40816133 ~ 40833502 (-) False LOC103041916
XM_007258358.3 mRNA downstream 94914 40622153 ~ 40636689 (-) False uhmk1
XM_007258359.3 mRNA downstream 94915 40619482 ~ 40636688 (-) True uhmk1
XM_022675829.1 mRNA downstream 94918 40619482 ~ 40636685 (-) False uhmk1
XM_022675830.1 mRNA downstream 94919 40619482 ~ 40636684 (-) False uhmk1
XM_007258374.3 mRNA downstream 367643 40360319 ~ 40363960 (-) True LOC103040080
XM_022675127.1 mRNA upstream 6046 40755348 ~ 40777657 (-) True LOC103034848
XM_022675837.1 mRNA upstream 67489 40816791 ~ 41017814 (-) True LOC103041916
XM_007258347.3 mRNA upstream 475539 41224841 ~ 41249611 (-) True LOC103032504
XM_022675838.1 mRNA upstream 501715 41251017 ~ 41260579 (-) False c13h1orf210
XM_022675839.1 mRNA upstream 501715 41251017 ~ 41259970 (-) True c13h1orf210
XR_002650725.1 other downstream 367643 40360401 ~ 40363960 (-) False LOC103040080
TU157786 other downstream 2347005 38381270 ~ 38384598 (-) True G116805
trnaq-uug_2 other downstream 3638533 37092999 ~ 37093070 (-) True trnaq-uug_2
TU157486 other downstream 3685815 37041361 ~ 37045788 (-) True G116581
XR_001518677.2 other downstream 3700243 37023391 ~ 37031360 (-) False LOC103023810
XR_002650728.1 other upstream 832531 41581833 ~ 41582017 (-) True LOC111193790

Expression Profile