RNA id: TU158550


Basic Information

Item Value
RNA id TU158550
length 1917
lncRNA type sense_over
GC content 0.38
exon number 6
gene id pomgnt1
representative False

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 41353501 ~ 41367729 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCTAGCCTAATTTATTtaggttttgtatttttgtctatTGTACTGAATTGATACTGTAGGTAATTTGtgttatgttttctttttgttgtgtagGAAGTGTACTTTAAGAAGCACAAGTTTAACACCGTCCCGAATgttcaattaaaaaatgttgacgGCTTGAAGAAAGATGACTATGAAGTTGAGATCCAGAATTTGTTACGTGAGGCAGAAGTTTTAGACCACAGCAAGAACCCTTGTGAGGATTCCTTTATACCAGACACTGAGGGCAAAACCTATATCATGTTTATCAAGATGGAGCAAGAAACAGATACCAGCACATGGACTGAACTGgctaagTGCCTGCATGTGTGGGATCTAGACGTGCGAGGCTATCACAGAGGGCTATGGAGACTCTTCAGAAAGAAGAACCATGTCCTTGTAGTGGCAGTTCCAGTCTCTGCCTACTCCATTAGGAAACCTGCTCACGTTACCCCGATTCATCTGCAGCCTCCGCCTAAAGAAGAGGGAGCCCCTGTGGAGCAGATGTAGAGCAGCTGCAGCCAGCTCCCAGGCTGCTTCTTAGCAGAGGCCACACTCGCACTGGGCATGCAACGGCCCTGTACTGGGAGAACCTCCTCCCGTCTGGCCACTCAGAAAAGCTGGGCTAGCTACCACAGCTTGTCCTTGTCCTTCACTAGAGCATTGTATGTGCTGCTTGTCTGGACCACAAGCTCTTGCATTATGTGAAGTGAGCATTTCTGGAGAATGGTAATGATGAGTAAAGCTCGATCAAATACTGGGAGGAGTTACAGTAAGTATTTAGAATTGTCCCGTGATTTCAAGATTACCGTGTGCATCCTTTATGCATTTGTGCTGAGAAAATGTAGAGAGATGTACAATTGTATTCCGTTAGATAAGAGCCAATCAACATTTCGTAGTTCTGATTTGGTACCTTGACTGAGCAAATGGTTTTGAACAAACTGGAAGACTGATTAAGAGAACTGAAGAGTATTAGATAAGAAAGGAATGGCAAAATCATACTACTATTTTTTAACACTACTGAATGCTTTCGGttttactgtacatacattttaacttaagcctatttattttaccatttgGGGGTTTCTTATGTTAGTGAGTTCAGatttatcagtatcagtatactTAGAGACAAAGGCCTGCAGTTGTTTACAAATATAAAGTTCTATAGACctatatttttggaaaaaaagcttGTCACCTTTTATTTAAGAGGTGGGTGGTAGTAGATACAAGGTTggtactgtttttgtttatcACCTGTTTGTGTAATAAAGAGACCCACAGCTGGTTGAGAGAATGTATGGTGCTCTTGTTGAAATGCACATCATTACCTCAGgtgatatttttaattaaagattCCATGAAGATGCATTCAGTCAGTAATTTAAATACACTGTCAGTTTCTTAAAGATTTGTGGTAACTCTTTTATGTTAtgtccttttttgttttcttcctaGTGGATAATCCCTGAGTTTATATCAATGTTGGATAAGATCTGGATGATATCTATGTCCAAATAAATTGTCAGGCaatgaaaaatacttttttatcaaTGCTATCTTGAGTACACTCTAGGTTCGTCCTGTTTCAATGTGACTGCCTTTATTTGATAATACTCATGTAAAAGAAAGTAATTTGCCATAAGTCCTGCAATAATATCCTATTCAGAGATCAGTGCTACGGTTAGCTACAGGCTTTACACTTTTAGGTATTTTTTTTGCTCTACAGCTAAATATTTTCTATGCGAATATGTGCAATAGCTGGGCAGATGTgtcatttagatttttgtttttctttttaaaatgactgACATTTTGCAGTATCAAGTGGAGACATGTCACCAAGTCCTTTAagcatttaattttctttttacatctGTTTGTGTAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158532 lncRNA upstream 9458 41353501 ~ 41354250 (+) False pomgnt1
TU158539 lncRNA upstream 11358 41350951 ~ 41352350 (+) True G117379
TU158538 lncRNA upstream 11358 41350975 ~ 41352350 (+) False G117379
TU158523 lncRNA upstream 27923 41332201 ~ 41335785 (+) True G117370
XR_002650727.1 lncRNA upstream 56797 41305323 ~ 41306911 (+) True LOC111193789
TU158646 lncRNA downstream 411272 41778951 ~ 41784207 (+) True G117474
TU158563 lncRNA downstream 434724 41802403 ~ 41805833 (+) True G117396
TU158564 lncRNA downstream 434724 41802403 ~ 41873492 (+) False G117396
TU158682 lncRNA downstream 524521 41892200 ~ 41897363 (+) True G117508
TU158717 lncRNA downstream 763904 42131583 ~ 42137890 (+) True G117530
XM_007258342.3 mRNA upstream 15909 41343422 ~ 41347799 (+) True prpf38a
XM_022675843.1 mRNA upstream 40090 41308576 ~ 41323618 (+) True mpl
XM_022675841.1 mRNA upstream 58479 41282851 ~ 41305229 (+) True tie1
XM_022675842.1 mRNA upstream 58479 41282851 ~ 41305229 (+) False tie1
XM_007258348.3 mRNA upstream 147441 41194102 ~ 41216267 (+) True tmem125
XM_022675844.1 mRNA downstream 118782 41486461 ~ 41801791 (+) True pik3r3
XM_022675854.1 mRNA downstream 722310 42089989 ~ 42099620 (+) True gpbp1l1
XM_007248162.2 mRNA downstream 722324 42090003 ~ 42099620 (+) False gpbp1l1
XM_022675853.1 mRNA downstream 722718 42090397 ~ 42099620 (+) False gpbp1l1
XM_007248293.3 mRNA downstream 734262 42101941 ~ 42113536 (+) True ccdc17
TU158258 other upstream 560165 40799471 ~ 40803543 (+) False LOC103033994
TU158255 other upstream 560165 40799571 ~ 40803543 (+) False LOC103033994
TU158023 other upstream 2004320 39358871 ~ 39359388 (+) True G116997
TU157374 other upstream 4252110 37100014 ~ 37111598 (+) False LOC103045245
XR_002650721.1 other upstream 4649824 36657392 ~ 36713884 (+) False LOC103044253
TU158846 other downstream 984128 42351807 ~ 42355784 (+) True G117642
TU158848 other downstream 984128 42351807 ~ 42355784 (+) False G117642

Expression Profile