RNA id: TU159271


Basic Information

Item Value
RNA id TU159271
length 3258
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G117963
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 43587502 ~ 43850446 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gctgctcctgcagtgctagccgaggttagcagcaggctacaggccaataattctcacctctgattggctaaagagctagcgtttaccACGGTGAGTGGCTAATTCAaatactgctccagccacgttgctggagaactaaactgaaattccagtataatgctgtacttcagcattGCTTCAGCattgcttcttacaacctgactgataaaattcatacataaggcgcaccagattataaaatgcactgatgatttttagaaaaattaaaggattttaagtgcgccttatagtgcgaaaaatgcagtattttattttacacatgAAGAGgattattttatcctcttcagtaaatCAGATGCCATGAAGTGTCATAGAGAATTTTCAATATTGAGTATCGCAGATTCATCATTATTGTGGGCaacgtattgtgataatatcatatcatgggatgccctgtgattcccacccctagttatttccattatagattaaaacacattttcttttagagCAGTCAATGTATTAATTATGGCTGTATGATTAATATGTcattttttgcatattatgACCCACATAAATCTTTGAATGGGAGTCTAAATTTGTTCTAAACTTTATATGGCTGTGCTtcctagaaaaaaaatacaaaaacataattaacaACCATGTCTCTTTCAAATTCGATCAGTAATTATCAAAACAAAGGGCATTTTAAATACTAGCTAATGACTGACAAAAGCATACATTAACAAGCAATTCTTTGGTATGCAGCTGAAGGATCAAAAGCTTATTTGTCGTTCAGATTTACTTTTGGTGCTCTGCATTAAATATGGTAGAAAGAGGAATGACTGTGGAATTATTATGGAATAATGCGGTAAAGATGTAAGTGATGTGAGATGAAGCAATGCTgtactgttgttgtttttttaatgcagcagCTCTTTCAGTGGGTCGAGGCTCTCTGTGCATCAGCTATATCTGTTGGAATCTTGGCACTCAGAAGCGAGCTGATGTAAGGCCAGATCCGATCTGTGTCTGTGTCAGAGAATGTGTGCAGAATTCCTTTGGCCCTGCAAACGGACATTAGAACAGCAATTAACAAATAGAGTCGATTAACAGTAGTTTATTGATGCAACTATTAGACTATCACAGTACAATGTGTAGCAACCACTGCTCTTTCTAGGAGTTCACTTGGGCAAAATACTCTGAACAGTTTctctaaaataatttttagtatttttttttatgtgttttttatttcaacaATCTTCCACAGTTTGGAAGGCCACTCAACCAATCCCCATTAAAACACACCCCTTCCTAGTaaccatcactagtaatgccaccAACATTAGGAGGGCAAGGCTGACGCCATGTCACACTAGAAGTCACACACCATTTACCCaccccagagagagaaagaccaactgtgctctctcggattccggctgctgatgccaaacaGGCAATCCGCAGATCACAGTTACAGCATCTTTGTCTACCGTACCACCTGGAGTTCTTGTGTTAtattcattttaagaccattttatgtTACAATTATGGGAAAAAAGGTATAATAAAGCAGTCACaccattaaaaacatacatatttgACCATGTGTAAAGGCAGCATTTCTAGCATTTATGCTATATGCTAGCATGTGACCTCATTTCCTATATGGTAGAGAGCAGTGTCCACCTATTTATTGTGACAGGAAACATTATAATGTTTGCAAAACATATTGGCAAGAACTTTTTGAATGAAATCATctcagtttagttaaaagtTCTCCAAACATTTTGTACCTACGCATTTTCATTTGGTTAACAATGTTTCCTACGTTGATGGAACTTAAAACAAACATAGAAAAATTTGCTGTaccagaaaatgaaaataaatatgaaattaaataatagtttaaataataaattaacatcaaatattttgtataatatttatttaatatcacttcctgcttattttatttaattactgtgTTTTCATCTGCAGGTTAGCACTCCCCTTACCGCATTATTTTGTCCACAAAACTAAATTCTCACTGTAAAATTCAATAATTGTGAGTGTGGACAACTTTGAACTAAAACTGAGTTAactcataaaattaaatataatcagttatgttcttattttaataggacatgccttttttttacagttatccATAAACCTGATGTTGTTTCAGAAAGATAAATACAACAGCTGTAATCATGCACTTTATCCCAAAGCTAAAGATGTGATgtgttaaatcatttataaaaaaaatactgcaaccATAGCAGCAAGAGAACATTTTAACATGGATAAAATTGCCAGTGTAATCCACACACTGCCAGCATTGCTTTACACATTGCATGCTTAACCTAGAATTAACATTAGTACTGCTGTGCAAAGTCTCTCTAACTTTACTGCactctgtactgtactgaatgAATCCAGGCCACACCTCGCTCTAGAATTTAGCACATCTTCTCCCCCTCACTGGCTGACCTAACCCTGATCTGGAAAAAACTATAAATGCTCAACTGACTAGTGAACCTGTTGAACTGTGTTCTCTTATTGTGTGTATTTCCACACAATGCATGGTTAAACTGGAATCAAATTAACTGAAAAGGTAATAAAACACCAGTATCTTACTGTGCAGTATAACAGTTGTAGTGTCAGCCTCCAGACTGCCACATAGCACTGGCAAAAGTCTAAATTCCGGGCAAGCTCACTGGAATTTGGCACTGTGTAGCAATGTTAGCAAGTAAAAACTCAAACTGAGCTCACAGAACTGCCTGTTTTTGATCACACCTTCACTTAAATAACTTGCTACaccaataattataataatatgatCCTAATCCTGTTACACTAGTATTTGGTGTTCTGCCATCGGTGTTCTGTAAATCCCGAAACGTCGCTCTGATTTCGTAGCTTTTGTGACCCTTTTGGCAAGACATCTTATTTTGCAAGTGGAAATTTCCGGTTCCACCTTCATATTCTGAATGGATTTGAGATGTGCTTCTTTATAGCATTTTGGAATGAATTTGATGCACTCTGTACGGTCCCCTTTCAAAATCTGAAAGATCCTGGCAgctatttttcacttttataaAAAGGCTCTCACTTACTGCCATTCCagaataatgataaaatatttcTCTCTGTAGATTGATACGGTGTTGGATGCTGTCTGatgattgctttgtgtgaatgtttggcaaagcgaggcgacgttcatttccatttaattctata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650731.1 lncRNA downstream 190422 43442852 ~ 43449854 (-) True LOC111193793
TU159251 lncRNA downstream 201941 43438122 ~ 43438335 (-) True G117954
TU159082 lncRNA downstream 407702 43226554 ~ 43232574 (-) False G117811
TU159083 lncRNA downstream 412937 43226554 ~ 43227339 (-) True G117811
TU158876 lncRNA downstream 1203739 42368505 ~ 42436537 (-) True G117662
TU159336 lncRNA upstream 33743 43884189 ~ 43886064 (-) True G118019
TU159358 lncRNA upstream 288323 44138769 ~ 44141095 (-) False G118041
TU159363 lncRNA upstream 288323 44138769 ~ 44141095 (-) True G118041
XM_022675867.1 mRNA downstream 21048 43567729 ~ 43619228 (-) True jak1
XM_022675131.1 mRNA downstream 813345 42745620 ~ 42826931 (-) True dock7
XM_007248177.3 mRNA downstream 911885 42657958 ~ 42728391 (-) True kank4
XR_002650728.1 other downstream 2058259 41581833 ~ 41582017 (-) True LOC111193790
XR_002650725.1 other downstream 3276316 40360401 ~ 40363960 (-) False LOC103040080
TU157786 other downstream 5255678 38381270 ~ 38384598 (-) True G116805
trnaq-uug_2 other downstream 6547206 37092999 ~ 37093070 (-) True trnaq-uug_2
TU157486 other downstream 6594488 37041361 ~ 37045788 (-) True G116581

Expression Profile