RNA id: XM_022675821.1


Basic Information

Item Value
RNA id XM_022675821.1
length 2163
RNA type mRNA
GC content 0.50
exon number 5
gene id lnp1
representative False

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 39013038 ~ 39025162 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGGCGCTTGTGTGCACTCATCTTGTTAATACAATATTTCCGACACAACTTAAAGGCAGCATAAATACCTCTCACAGGACCAGACTAAATGACACATTTATGTGACCCAGAGTTCATATAGTCTACCACTTCAGCATGACACACAACAGGTGCTCCATTTTACACACGTCTCTGCATACTCTGCTGCCCTCTGGGATGGTGGTATGAACAACTGGAGCAGGACAGTAGACAGAGCTGCAGGGAGGCTGCCGTGTGCCCCAGATTGCTTTTTTATGAAGGGAGGTTTGTCATTTTCTCCAAAACAGGGTCAGCCCAAAATACACCagctacaaagaaaaaaagcttcTAATGCCAGTATCAGCTGGTAGGAGTCAGCACACTTTACAGAACCATCCTCCTAGTCCCGCTTCTAAAAAGTGTTTAATGGTACTTGCTAGGAATTCATTGAGATATCAGATATCATTATTTGCTATGTAGCCTATGGTATGACCCAGTTGTGTGACTGTAATGTACAGTAAAAGGCTTTAACAGTACTAGCAGTATAGTACtactgtgtgtttacagttGTGGCAGAATGAGTGATGCCATAAGATACCCTACACAAACTGGTCTTCACTGCTGGggtccataattattggcaggTTTCATGTGCTCAACCAGTGGAAAGAATGGGAAAattagtgtttctgtgtgtgtgactgtatatgtgtgtgttgtatgtgtggGCGTGACCGGGCCCTCTAGGCCTGAGGTCTGTAATGGAAAGATTTTAAAAGCAGaccacccccccccaccaccaccaccactgcctacatacaaacacaataCCAACACATATACCCCGCCCATTCAGATTCTTTCATCCACACATCAGTAGACCCCCCCTCCCTTTCCCCACTACatacccactctctctctctctctctctccctccctcctatCCTATGATAGTCCtacatctctctccctctcccataACCCCCTCCCTCCTGCTCTGATGCTAAACAGATTACAGGGGATTCGCTTATTTAAAGACTTGGACAAGAActgtgcaagtgtgtgtttgtgtattttcgGACCAGCTTACACACTGAGCTCACCTAACCAACTCTGGGGATCTAATTACAGCATCTCGCCCTGCCCTGTCTGGTCCATCCTCATCCTAGGTCTGGTCCATCCTTtccagagcccagagagagtGCCACAGCTCATCCATTCAGGTTCTGGTCAATCCAGCATCAGACAGGTTCAGCTATTCGATTCGGATTACCCTGGCCAGCAGCAGGccagttttttttcctcccacAGGTCAGGAGCCCCTTAGGGAGCTCCACACACACCAGCCTTCAAGCTGTCTTTGCGGCTCCTGCCCGCCATCATCATGGAcaatgatgaggatgatgatgggaACTTCACCAAGTGGATGAGCAGCTACTGGGGACACGGAGCTGGGGAGGAGTCGGccaaagagaggaagaggagcttCCGCAGGCCTGCTCGCAACACTGCTGACCGCCGCGCCTCTTTGCCCTGCATGGTAGGGAGCCAGCGACACCAGGGGGAAGAGtcACAGCTGGAAAACATGAGGGTGAAGCAGCTCCATGCTGCCACCATGCCTCCAGCACCTGTCCACCCAAAGAACCGTGAGGAGAAAGAGGTGCAACCTCACCCTCACGCTCGCCGTGTCTCCTCAGACGAAAGCAGCCGGACAAAAGCAGGACCAGAGAGCCGCATTAGCACCATCCCTGAGCTGGCCGAGTCATTTGAGAGAATGTTGCGCTTCCGAAAACAGAAGGTCATGTCTCTGAGTGATGCAGACAGTGTCTGTTTAATCTGCCATGAAGAAATGTGCAATGGAGGAGGTGGGATAGGAGGAGCATTCGAACTTCACTGCTCCCATCGTTTTCACAAAGAGGCGAGGAGGTCAGACCCGGGTGGTCGTCCACGCAGCGGGAGTTCCACTGGTGTGTGTGATCGCAGGAAGGAGGTGCCATTCTGCTCTGGACAAGAAGAGTACCGTATTCCCCGTCGAAAACTCTCCCTACGCAGACAACGCTGATACACCTCCATCGGAAGACTTGCATTGAAGAGTGGCTCTGGAGCCAGTGGTTGTGTCCCTCCTGTAGCATCTATGTGGTCATGCCTGAACCTCTCTACTGGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157957 lncRNA downstream 11409 39000643 ~ 39002353 (-) True G116946
TU157958 lncRNA downstream 11409 39000643 ~ 39002353 (-) False G116946
TU157951 lncRNA downstream 59253 38953162 ~ 38954509 (-) False LOC103032356
TU157950 lncRNA downstream 59253 38953203 ~ 38954509 (-) False LOC103032356
TU157930 lncRNA downstream 346551 38630637 ~ 38667211 (-) False negr1
TU157969 lncRNA upstream 21185 39046347 ~ 39049565 (-) True G116954
TU157977 lncRNA upstream 125666 39150828 ~ 39151231 (-) True G116961
TU157980 lncRNA upstream 160353 39185515 ~ 39185756 (-) True G116964
TU158009 lncRNA upstream 259690 39284852 ~ 39285631 (-) False LOC103028549
TU158031 lncRNA upstream 336308 39361470 ~ 39361798 (-) True G117002
XM_007249075.3 mRNA downstream 2008 39002702 ~ 39011754 (-) True LOC103031712
XM_007249076.3 mRNA downstream 13597 38996878 ~ 39000165 (-) True LOC103032030
XM_022675817.1 mRNA downstream 17444 38972149 ~ 38996318 (-) False chd1l
XM_022675823.1 mRNA upstream 246628 39271790 ~ 39282915 (-) True LOC111193786
XM_007249063.3 mRNA upstream 259055 39284217 ~ 39291028 (-) True LOC103028549
XM_007258374.3 mRNA upstream 1335157 40360319 ~ 40363960 (-) True LOC103040080
XM_007258359.3 mRNA upstream 1594320 40619482 ~ 40636688 (-) True uhmk1
XM_022675829.1 mRNA upstream 1594320 40619482 ~ 40636685 (-) False uhmk1
TU157786 other downstream 629164 38381270 ~ 38384598 (-) True G116805
trnaq-uug_2 other downstream 1920692 37092999 ~ 37093070 (-) True trnaq-uug_2
TU157486 other downstream 1967974 37041361 ~ 37045788 (-) True G116581
XR_001518677.2 other downstream 1982402 37023391 ~ 37031360 (-) False LOC103023810
TU156955 other downstream 2951833 36056563 ~ 36061929 (-) True LOC103028059
XR_002650725.1 other upstream 1335239 40360401 ~ 40363960 (-) False LOC103040080
XR_002650728.1 other upstream 2556671 41581833 ~ 41582017 (-) True LOC111193790

Expression Profile