RNA id: XM_007249086.3


Basic Information

Item Value
RNA id XM_007249086.3
length 1909
RNA type mRNA
GC content 0.48
exon number 12
gene id cth
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 38417049 ~ 38433857 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AATGGCTGTCAGTGTGCGGGAGGGAGTCAGACGGTTCGCGGGTATAAGACTAATGTTTCTGCTGCTCCGGGTTTCAGTGGTAACCGCGGTCTCCGGTACGCAGGCAGTGTGATTCCTCCCCCCGCGCGTGTTGATCTGCTCTCAGGGACGCGTGTCTCCTCCAGGCCGGTCTGCAGTAAATAAAGCATGGCTAGCGGCAGCGGCAGCGGCGGCGAGTGGCTGTCCGGGTTCAGCTCTTTCGCCACGGACGCGATTCACGTAGGCCAGGAGCCGGAGCAGTGGAACTCCATGGCCGTGGTTCCTCCCATTTCACTCTCCACCACCTTTAAACAGTACGGCCCGGGCAAGCACGCGGGATTTGAGTACAGTCGCAGTGGAAATCCCACACGCAACTGCCTTGAGAAGGCGGTTGCTTCTTTGGATGGAGCTAAGCACTGTGTTGCTCTTGCCTCTGGACTTGCTGCTACTGTGACCGTTACGCACATGCTGAAATCTGGGGATGGAATCGTGTGCATGAATGATGTCTATGGAGGAACCAATCGCTATTTCCAAAGAATAGCTAAAGAAATTGGCTATGATATCTCCTTCGCTGATTGCACAAAGCCTGAAGTCTTAAAGGCAGCTCTTAAGCCTAATACAAAGATGTTGTGGATTGAGACTCCATCAAACCCAACAATGAAGGTTGTGGACATACAAGCATGTTCAGACCTTGCACATGAACAAAACAAAGACATTATTGTAGTTGTGGACAATACCTTCATGTCTGCCTATTTCCAGCGCCCTCTGGCTCTTGGAGCAGACATCTGCATGTATTCTGCAACAAAGTACATGAACGGACACAGTGATGTCGTTATGGGGCTGATTTCTGTTAACCGCGAGGACCTCTATGAACGACTGAAGTTTTTACAGAATGCTTTGGGAGCTGTTCCGTCCCCATTTGACTGCTACATGTGCAATCGAGGACTGAAGACTCTGCACCTGAGAATGAAGCAGCACTTCAAGAACGCAATGGCTGTGGCTGAGTTTTTAGAACGGGACCCCAGGGTGGACAAAGTCATTTTCCCAGGTCTACCTTCCCACCCTCAGCATGAGCTAATGAAGAAACAGTGCACGGGATGCCCCGGCATGATTACCTTCTACATTAAAGGCAAACTGGAGCATGCCACAGCTTTCCTCAATAACCTCAAGTTATTTGCACTTGCTGAAAGTCTGGGGGGTTATGAGAGTCTGGCGGAGCATCCAGCGATTATGACTCATGCTTCAGTGCCAGAAAACGAGCGGGTGGTGCTGGGCATCAGTGATACACTCATTCGTCTCTCTGTGGGACTGGAAGATGAAGAGGACATTATCGCAGACCTGGACCAAGCTCTCGGTGCTGCTcatccAAAGAAATGAACTCAACAGGATGGGCCAGGAGCTACAACGCCTTCTCTAATGAGCAGAGGAAATTTCTTACAATCGgcacatgtttattttatagataGTATGTAATGGTTATGCttgaaataatacatttttacatcagggatcaaattaaaacagaattaGTGTGCTTCCATAGATCCACAATTATTTGTATCCATTTTTTCCCCACACCAACCAGGGGACATCTGAGATTTAAGGTACATGCCATCTTACTTAATGTTTGCTGCTTTTACATTTATCTCTTTGCTGATTGTGTAGTAATTGGATTTGCAGGTGTGATAGTTGGCTCCTATATTGGCGTGGCCTTAAGGGCATTAGGGAAATCTAAAAGTGAATGGTAGAAGGGTGAGAAAAGGGAATTGTGCTCTGATGAGTTAATTTTATTTCCGTCTTCATAAACACTGAATCTGGGACTGTATCTGCGTGATTGGAAGTGATCTTACATCATCTGATACTGTAGAAGTAGTTGCATTCTCATTCCGGG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0016829 lyase activity molecular_function

KEGG:

id description
K01758 CTH; cystathionine gamma-lyase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157759 lncRNA upstream 22519 38390390 ~ 38394530 (+) True LOC103036266
TU157674 lncRNA upstream 182968 38233474 ~ 38234081 (+) True G116730
XR_002650724.1 lncRNA upstream 530314 37852643 ~ 37886735 (+) True LOC111193782
TU157482 lncRNA upstream 616295 37800217 ~ 37800754 (+) True G116580
TU157475 lncRNA upstream 743963 37671836 ~ 37673086 (+) True G116574
TU157828 lncRNA downstream 72924 38506781 ~ 38511435 (+) True G116837
TU157832 lncRNA downstream 102986 38536843 ~ 38537047 (+) True G116841
TU157836 lncRNA downstream 136547 38570404 ~ 38570657 (+) True G116845
TU157843 lncRNA downstream 192937 38626794 ~ 38628164 (+) True G116852
TU157860 lncRNA downstream 519370 38953227 ~ 38954811 (+) True G116869
XM_007249083.2 mRNA upstream 9752 38403349 ~ 38407297 (+) True nit2
XM_022675809.1 mRNA upstream 22527 38390280 ~ 38394522 (+) False LOC103036266
XM_022675810.1 mRNA upstream 22957 38390277 ~ 38394092 (+) False LOC103036266
XM_007249088.3 mRNA upstream 29003 38381185 ~ 38388046 (+) True LOC103035541
XM_022675808.1 mRNA upstream 29003 38381185 ~ 38388046 (+) False LOC103035541
XM_022675822.1 mRNA downstream 598270 39032127 ~ 39081111 (+) True opa1
XM_007249068.2 mRNA downstream 598270 39032127 ~ 39081111 (+) False opa1
XM_007249069.2 mRNA downstream 598270 39032127 ~ 39081111 (+) False opa1
XM_007249064.3 mRNA downstream 775957 39209814 ~ 39211823 (+) True hes1
XM_022675824.1 mRNA downstream 1083643 39517500 ~ 39594023 (+) True LOC103022251
TU157374 other upstream 1305451 37100014 ~ 37111598 (+) False LOC103045245
XR_002650721.1 other upstream 1703165 36657392 ~ 36713884 (+) False LOC103044253
trnaf-gaa_2 other upstream 2168204 36248773 ~ 36248845 (+) True trnaf-gaa_2
TU156853 other upstream 2428989 35982119 ~ 35988060 (+) True G116103
TU156628 other upstream 2682690 35730653 ~ 35734359 (+) True G115931
TU158023 other downstream 925014 39358871 ~ 39359388 (+) True G116997
TU158258 other downstream 2365614 40799471 ~ 40803543 (+) False LOC103033994
TU158255 other downstream 2365714 40799571 ~ 40803543 (+) False LOC103033994
TU158846 other downstream 3917950 42351807 ~ 42355784 (+) True G117642
TU158848 other downstream 3917950 42351807 ~ 42355784 (+) False G117642

Expression Profile