RNA id: XM_022675807.1


Basic Information

Item Value
RNA id XM_022675807.1
length 2144
RNA type mRNA
GC content 0.41
exon number 5
gene id rp2
representative False

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 38347868 ~ 38355991 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCGGCTGAGCTGAGCTGGCGAGTTTGGGTTAGTTTCGACTGCCGTCGCCGCCGCTACCATTAAACTGGCCGTAATTATAAAGTAGAGCGTCTTATCGGCTTAAGGCGACATGTAGCCACAGCTAGgctgttagctagttagctaacgtgTTCGTGTGGCAGCCCTCCAGATATCGAGCTGTGTGCGGATTAATTCGTAAACAGCCAGGCCACGGAGGTCCACTTCCTTCAGGGCTTACTACAACAGGAGACTGGGTGACCAGGTTGAGgtTGACCCCAAGGACTTCATGCTAACTGGTGTGAAGGATGCCACCGTGGGTCGTCTGCCAGGAAAACTGAATGGCCAGCAGTTTGTTATTCAGGACTGTGAGAACTGCAACATCTTTGTGTTTGACCACTCAGCAACAGTGACCATTGACGACTGTGTAAACTGTCGCATAGTGCTTGGACCAGTCAAAGGCAGTGTGTTCTTCCGCGACTGCAAAGACATTAAGTGTGTGGTGGCCTGCCAGCAGTTCCGGACAAGGGACTGCAAAAAGATGGatgtctttttgtgttgtgCCACTCAGCCCATCATTGAATCGTCCACCAGCATGAAGTTTGGCTGCTTCCAGTACTATTATCCAGATCTGGCCTTCCACTTCAAAGATGCAGGTCTGAGCATCTTCAACAACAACTGGAGCAATATACATGATTTCACACCCGTCTCTGGAGAAACCAATTGGAGTCTACTACCAGAGGATGCTGCGGTGTTGGAGTATGTGCCTCTACCTGACTCTGAGTCAGAGTTTAAGTCTGTACGTATCTCTACTGAAGTAAATCGGAGTATTGTGCCCATGACCAAAGGTGGGAGGCGTAAGGAGAGTGAGGAGTCCTGCCTGTTTGTGTTCTTTGCTGGAGACTACACCACAGCCAACGCTCGCAAGCTTATTGACGAGaCAACTGCCAAAGGTTATACACTCATCCAAACCAAAGAAGTCTCCATGCGTCCAGAAGACGTGAACAGAGTGTTCCAGAACAATGCTGAGGGTCTGACTGAGTGGACCTCAAATGGTCCTGTTGTAGCCCTTGAGCTAAATGGAGATGGTGTGGTGGAGGCCTGCAGAAGCATTGCCAATGAGATTTTTAATGGAACAAAGGTCTTCGTTTCTGAGAATAAATCTTCAGCTTCTCGGGACGTTGACAACTTTTTCAACTTTGCTGACATGCAGATGGGATTGTAAAtcgaatgaaagaaaaaacgttttatacattttgtacTTCCAGTATTGTGAGTTAGAATGAGGGTTTTTTTCCTAATCTAGtaatgagatgagatgaaatGGGTGTAGTTATTGACATCTCTCATGTTGAAGGGTGTTTAATCTATTTACACTTACTCGAGTAATTAGTGctgctaaaaatattttttgaggaTTAGAACATTTTTATGCTGTTAATGCCATTTTACTGTGTTTGTACACAGTTGCGTGCAAAATTTGTAGAGGCAGTGAAAATCTAAAACAGATGAATCTGGAGAGTTCAGACTCTAAATAAAGAATACTGTGGCCATTGTCAATCATGCTGaaaataataacttaatgtatttatttatgtgtttttagaaATGTAAAACTGGAAATAGTGTGTTCCGTTTGTTGGTATGCATTTCCTATACATGTTTGTAGCCTGtcaatgtgtctgtgtgtgtgtgtatataggcCTAGATGTGGACAATGTAAAGTCTGAAATCAGAATGATTTATAATATTCCTAATATTTGAGAGCCTATATTTCTTTATGAAAtactgtttgtttaatttttttggatCATTTATGCTCAGTCAGAATGAGAATGTCAGAATGTCTGTTATTTATGAAATGCTTTGAAAGGAATATCAAAAGGTAATTTCACAGTAATTAGATCTACAGTAATTGAATCTACTGCTCAGAGGAGTTCActgtttgtttgctgtttttatatgAATGTTTTAATGAGCCCAGTTTTAGTCCTGTGACCAAAAacaatcatttttatttgtacaaaTGAGAGAAATGCCTCACAATGTACTTTTATACGTTTGAATCATTCTTATTTGTATATGGCAGTTTTGTAGAAATGAATGTAAACTGTAATTTATcaatatattaatttgtttaaagaCTT

Function

GO:

id name namespace
GO:0000902 cell morphogenesis biological_process
GO:0048793 pronephros development biological_process
GO:0035845 photoreceptor cell outer segment organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0006183 GTP biosynthetic process biological_process
GO:0006228 UTP biosynthetic process biological_process
GO:0006241 CTP biosynthetic process biological_process
GO:0010842 retina layer formation biological_process
GO:0001947 heart looping biological_process
GO:0005524 ATP binding molecular_function
GO:0004550 nucleoside diphosphate kinase activity molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157674 lncRNA upstream 114668 38233474 ~ 38234081 (+) True G116730
XR_002650724.1 lncRNA upstream 462014 37852643 ~ 37886735 (+) True LOC111193782
TU157482 lncRNA upstream 547995 37800217 ~ 37800754 (+) True G116580
TU157475 lncRNA upstream 675663 37671836 ~ 37673086 (+) True G116574
TU157460 lncRNA upstream 736445 37606985 ~ 37612304 (+) False gabra5
TU157759 lncRNA downstream 34399 38390390 ~ 38394530 (+) True LOC103036266
TU157828 lncRNA downstream 150790 38506781 ~ 38511435 (+) True G116837
TU157832 lncRNA downstream 180852 38536843 ~ 38537047 (+) True G116841
TU157836 lncRNA downstream 214413 38570404 ~ 38570657 (+) True G116845
TU157843 lncRNA downstream 270803 38626794 ~ 38628164 (+) True G116852
XM_007249094.2 mRNA upstream 85846 38247974 ~ 38262903 (+) True chst7
XM_022675806.1 mRNA upstream 158818 38184325 ~ 38189931 (+) True fndc9
XM_007249101.3 mRNA upstream 183785 38155099 ~ 38164964 (+) False nipa2
XM_007249100.3 mRNA upstream 183785 38157068 ~ 38164964 (+) True nipa2
XM_007249105.3 mRNA upstream 194590 38147942 ~ 38154159 (+) True nipa1
XM_007249098.3 mRNA downstream 1867 38357858 ~ 38374376 (+) False jade3
XM_007249097.3 mRNA downstream 1871 38357862 ~ 38376427 (+) True jade3
XM_007249088.3 mRNA downstream 25194 38381185 ~ 38388046 (+) True LOC103035541
XM_022675808.1 mRNA downstream 25194 38381185 ~ 38388046 (+) False LOC103035541
XM_022675810.1 mRNA downstream 34286 38390277 ~ 38394092 (+) False LOC103036266
TU157374 other upstream 1237151 37100014 ~ 37111598 (+) False LOC103045245
XR_002650721.1 other upstream 1634865 36657392 ~ 36713884 (+) False LOC103044253
trnaf-gaa_2 other upstream 2099904 36248773 ~ 36248845 (+) True trnaf-gaa_2
TU156853 other upstream 2360689 35982119 ~ 35988060 (+) True G116103
TU156628 other upstream 2614390 35730653 ~ 35734359 (+) True G115931
TU158023 other downstream 1002880 39358871 ~ 39359388 (+) True G116997
TU158258 other downstream 2443480 40799471 ~ 40803543 (+) False LOC103033994
TU158255 other downstream 2443580 40799571 ~ 40803543 (+) False LOC103033994
TU158846 other downstream 3995816 42351807 ~ 42355784 (+) True G117642
TU158848 other downstream 3995816 42351807 ~ 42355784 (+) False G117642

Expression Profile