RNA id: XM_007249111.3


Basic Information

Item Value
RNA id XM_007249111.3
length 4365
RNA type mRNA
GC content 0.44
exon number 9
gene id gabrb3
representative False

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 37442908 ~ 37596172 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTTAAAACAGCCGCGCGCGCGCGCTGCTGCTAGTTAGCGTTGCTAGCCAACCGCGGGGGTCACGTGACGAGCGCCTTTTTCCCTTCAGAGGCGAGAAGTCTGTCTTAATTGCGTGAGTTTACTCAAACTGtgggcagcagcagcggcggatTCCCACACGTCTTCATTCACTTAGCCAGGGTTAGCTAGAGCTACAGGCATTCATTCAGCCGGCGAGCTTGGGAGGTGAAAGAACTCctgaaattacatttttttagtgtgttttttttttcctcttttatttgtttgttttttctgttctctgtttttttttgtttactgtgagctgtgatgattatttttttagcctCAAAAACGAGGAAAGCTACAAAACAAACGCGTACTGAACTAAAGTAAACACCACTCAATAGTGGACTTCAGTAACTTAGTGGATGTAGGATATTTATCTATTAGCTGGAGTCCTACTAAcccctccagcagcagcaggagcagcagcaggagcggGCAGGTgtgtgagatatatatatatatatatattatagagagagagggagaagcgAAGGATGGAGGTTTGGCTGAGCCCCAAACAGCGACTCCCCTACGGCCGATGTCCATAGAGTCTGTGGGCACGATGCTGCGTGGCAGTTCACGAACAGCGCACAGCCAGCGTCTCCAGAGAAGAGCGAAACGAGCGAAAAGCCGGACCGCGACCACCTCTCTCCCCCCCAACCCAGCAGCGCCAACGGACCGGACTCACAAGCGGCTTCATCCGCACGCAGGCACTGATGGAGTAGCGCCGAGCGGCGGAGACCTGTAGCCGGGCGGTGGTGACACAGACACCGGGGGAAGCCTCGCAACGTCCGTTCGCTCACTCAGCTCCTTGTGAGAAAGAGTAAGGAATGATTGGGGCACAGAAACGAAGGCTGTTTGGTGTTCTCTCAGTGCCGGTGCTTGTGGCTGTGATGTGCTGTGCTCAGAGCGCCAACGAACCAGGCAACATGTCTTTCGTGAAAGAGACAGTGGACAAGCTGCTGAAAGGATACGACATTCGCCTTCGACCGGACTTTGGAGGTGCACCGGTTGCGGTTGGGATGAGTATCGACGTGGCCAGCATAGACATGGTGTCTGAGGTGAACATGGACTACACGCTGACTATGTACTTCCAGCAGTACTGGAGGGATAAGCGGCTAGCATATGCTGGGATTCCTCTCAACCTAACCCTGGACAATAGGGTGGCTGACCAGCTCTGGGTCCCGGACACTTACTTCCTCAACGATAAGAAATCCTTTGTCCATGGTGTGACTGTGAAGAACCGCATGATCCGCCTGCACCCTGATGGCACGGTTCTTTACGGACTGAGAATCACCACAACAGCTGCTTGCATGATGGATCTGAGGAGGTATCCTCTTGATGAACAAAACTGCACTCTGGAGATAGAGAGCTATGGCTACACAACTGATGATATTGAGTTCTACTGGAAAGGAGGAGACAACGCAGTGACCGGTGTGTCTCGAATCGAGCTCCCTCAGTTCTCAATAGTAGACTACAAACTGGTCTCCCGAAATGTCGTCTTCTCCACAGGTGCCTATCCCCGGCTGTCTTTGAGCTTTAAGCTGAAGAGGAACATCGGCTATTTCATCCTGCAGACGTACATGCCCTCCATCCTGATCACCATCCTGTCCTGGGTCTCTTTCTGGATCAACTATGACGCATCTGCAGCCAGAGTAGCATTAGGCATCACAACTGTGCTGACTATGACCACCATCAACACCCATCTGAGGGAAACGCTGCCCAAGATCCCATACGTCAAAGCCATAGACATGTACCTGATGGGCTGCTTCGTCTTCGTGTTCTTGGCCTTGCTGGAGTACGCCTTCGTCAACTACATCTTCTTCGGCCGAGGTCCACAGATGCAGAAAAAGTTGGCTGAAAAGGCAGAGAAAGCCAACAATGACCGCACCAAATATGACGGAAACAAGGTGGACTCCCAAGGGAACATCCTCCTGACCACTCTGGAAATCCACAACGAGGTAGCTGGAAATGAGGTGACCACCAGCGTCAGTGAAGCGCGCAACTCCACGTCCATGGTGTTCGATAACTCAGGGATCCAGTACCGGAAGCAGAGTGCCCCGCGGCACGACACTACCCGTCACAGCGTGGACAGGAACGCGCAGCCCAAGAAAGCCAGGCTGCGCCGGCGCTCGTCCCAGCTCAAAATCAAAATCCCTGACCTAACGGACGTTAACGCCATCGATCGATGGTCAAGGATAATATTCCCCGCTGTGTTTTCCCTCTTCAATTTGATCTACTGGCTTTACTATGTGAATTAAGCCACAGATCTGagtgtttttttcctcctttgcAATTATCTTTTCCATTTTAGAGGcaaaataagacttttttttctcttttcaaagGACGTATTTATTTGTGCGCCAATGTGGTGAGCGTGAGCTTTTTTGTACTTGCAAACCCTTGCTTTTCTGTGAGGGTACCAATGGAAGACAATGTGCACTAAACTGGGCTTTCtcatcacacacacccacttTCACATCCATATCTGCTTACATACACATGTACAGATGCTCACAAACAGAATCCATTTTATAAAGACTCTTTGTACAGAACTGCTGAGATTTTGAAGCTGTGGGACTTCCTCCTGATGCAACCGGACCCTTTTTAAACTTACACCAACCTGTTCAATGAATTTAATAGACAACTTCAATGAAAGGTGTCACCTGCAAATGTTTCATGCCAATAAGCCTCCATTATTAGATTATCGAGAACAAACCTAAAATGACTTGTTTTACACCAGATTATAGAAATGCAATATACTGTACTTACAGTTGTGTTTTCACAAGATTCAGCATTGACGATTTTTCCATCAGCAGTTGTGTTTAAGACATTTAGACATTTACTGATGTGTATGAATGGAATTTTGTTTGTATATAGTCGTGTTATGACATACTTTTGGGACATGATTTCCATCTGCCTTGGGATGATATAGATGACTTTTCACAGACTTGGTGTGTATGTGCTTCAGTACATGTAACTATCTGAGTAATGCTTGTGCACTCATCACATTTTGATTCATATAAAAGCATAACTGCCAGTGTTGTGGAATGTTTAAATCAGGGCCTGCAAATGACTTCCATAATGCCAACATATGCATTATAGGGCAACGTTATAGGTATCGTACATAgacttttgttttaaaatggttaATTTCTGTCAGTAGTTGTATAGCATTTAGcatgtgtattttttaagtGAGAGATTATGACTCAGACATTTGTAATGAATGTTTGAGTCTAATAACATTATTGTAGGCCTTATGTAAGCTGTCGTATGGTCCACTGACGATGTTTGTTTGACCAAAAATTCCACCTAGcctcttttcatcttttttttttccatcagtgTTCCTTTGATTGCTGGATTATAGACTAAAGGAAAAGTGGTTTGAGGTGCAGTGTGTAcccatgagaaaaaaaaacaacaacaaaaacttaTCTCAGGTTTTGCTCCAAGATTCTCACGACCCCCAATGCATTGCATTTCTATTATTGGCCATATGCATAGATCAGCATTATATTTGCTGCAATTCATTTGTATTATATGCTCATGTACTCCAAACAGAATGACTGCACAGGCTGATTTGTCTTCTTATTCCAATAGCATGGTATTCTTTATATGTAGAGGACTAAACTGATTGTATTCCATCTTGCTTTGGAGATCACTTTGCCACGAGTCATTCCAGTGACCACTAACCTTTGCTTCAGGGACCGAGGACCTTGCTGTCTGTTGAGAGAATGAtgtaatttataaaacatgctcaCAAATGACCCAAATATGTTTATACTACCCCTTTTGAAATACTCGGTGTGTGCTGTCAACATGTCGCATTAACAGGCTGCTCTGCAGTTATGTTGTGTCAGTAGTTGCTTGTTATTTCTTTGATTGCTCCTTTTCCTTCTATTCTGTGTTGTAAATATATGGCAGAATATCCAGATTTGTGAGCTGTTGTTTTCTGGGTTTTATTTTTAACCTTAAGGTTCTGCTCTCTTCTGTTCTCCACAAACCACCAGATATCTATTATTGAAATGTGTCCGAATCAGTAAATATATGTGGGGTGGATTTATAGGCTATTCCGAggacatttgttttaaaaataaacttttctctttcaagaattctttttttttttttttgttattttaaactgCTGTTGTAAGGTCTGATTTACAGCAAATAGCAAAATTCATTCGAAACAAATCACTGACAAACTTTATGAGACTGTTTGACATTAATATTTGatgtaaatacaaaaacaataccacagaaatatattatttgcattaaaa

Function

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004890 GABA-A receptor activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157562 lncRNA downstream 6722 37435883 ~ 37436186 (-) True G116636
TU157550 lncRNA downstream 190147 37252216 ~ 37252761 (-) True G116629
TU157531 lncRNA downstream 291670 37145396 ~ 37151238 (-) True G116613
TU157496 lncRNA downstream 318476 37121417 ~ 37124432 (-) True G116585
TU157495 lncRNA downstream 321598 37118500 ~ 37121310 (-) True G116584
TU157572 lncRNA upstream 90835 37600824 ~ 37612287 (-) True G116646
TU157583 lncRNA upstream 130504 37640493 ~ 37684432 (-) False G116653
TU157582 lncRNA upstream 144096 37654085 ~ 37684432 (-) False G116653
TU157581 lncRNA upstream 159623 37669612 ~ 37684432 (-) False G116653
TU157584 lncRNA upstream 174067 37684056 ~ 37759160 (-) True G116653
XM_022675794.1 mRNA downstream 88516 37274323 ~ 37354392 (-) True atp10a
XM_007249113.2 mRNA downstream 198669 37235624 ~ 37244239 (-) True ube3a
XM_007249116.3 mRNA downstream 240047 37191030 ~ 37202861 (-) True LOC103043620
XM_007249118.3 mRNA downstream 263353 37168975 ~ 37179555 (-) False LOC103043928
XM_007249117.3 mRNA downstream 263354 37168181 ~ 37179554 (-) True LOC103043928
XM_022675048.1 mRNA upstream 394646 37904635 ~ 38036958 (-) True oca2
NM_001320209.1 mRNA upstream 395011 37905000 ~ 38048888 (-) False oca2
XM_022675804.1 mRNA upstream 548938 38058927 ~ 38146623 (-) False herc2
XM_022675803.1 mRNA upstream 548938 38058927 ~ 38146623 (-) False herc2
XM_022675802.1 mRNA upstream 548938 38058927 ~ 38146623 (-) False herc2
trnaq-uug_2 other downstream 349838 37092999 ~ 37093070 (-) True trnaq-uug_2
TU157486 other downstream 397120 37041361 ~ 37045788 (-) True G116581
XR_001518677.2 other downstream 411548 37023391 ~ 37031360 (-) False LOC103023810
TU156955 other downstream 1380979 36056563 ~ 36061929 (-) True LOC103028059
TU156811 other downstream 1484479 35955109 ~ 35958429 (-) False LOC103031109
TU157786 other upstream 871281 38381270 ~ 38384598 (-) True G116805
XR_002650725.1 other upstream 2850412 40360401 ~ 40363960 (-) False LOC103040080
XR_002650728.1 other upstream 4071844 41581833 ~ 41582017 (-) True LOC111193790

Expression Profile