RNA id: XM_007249116.3


Basic Information

Item Value
RNA id XM_007249116.3
length 4226
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC103043620
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 37191030 ~ 37202861 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCATTCAAGCCTCATTCACATCAAATGGAGCTGCGGGGCGCGGGAGGCTCGGATATTAGTGTCTCCGGTGAGAAAACACGGAGAATCCGAGTCGCGGAGAGTCCGCCTCCTCAGACTCTGTTTTAGTCTAGCTAGCGTTAGTAATGCGAGCTGACCGGCTCCCCGCGGGTTCTCTCAGGAGCTGAGGAGATGTGATGGAAGCGGGGGCCAGAGACCGAGAGCGGCGGCGGGTGACCAGAGCCCGCGAGCGGTTGAGCTCCCGCGCCGAGGCGGGCGGCTCCGTGCTGCGGGCGCTGACCGTGGGGAACGTCGGCGACGAGAATGAAGCGATGGAGGACGAGCGGCTGAAAGACGACCTTCTGGAGCGGAAGGTCGTGGCGCCGCGGTACAGCCTGGTGCGGGAGATCGGCCGGGGCAGCTACGGGGTGGTGTACGAGGCCATAGCGCGGAGGTCTGGAGCGCTGATGGCCGTGAAGAAGCTGCGCTGCGACGCGCCGGAGAACgtggagctggcgctggcggagTTCTGGGCCCTGGCGAGTCTGGAGAAGCGGCACGAGAACGTGGTTCACCTGGAGGAGTGTGTGCTCCAGAGGAACGGCATGGCGCAGAAGATGAGCCACGGGAACAAGCGCTCCAGGCAGTATTTACGCCTGGTGGAGACTTCCTTGAAAGGTGAGCGGGTGCTGTCTGGTCCTCAGGAGCCATGCTACTTGTGGTTCGTAATGGAGTTCTGCGAGGGAGGAGACCTAAATCAGTTCATCCTGTCACGTCGGCCTGATCCACACACCAATGCAAGCTTTATGCTTCAGCTAAGCAGTGCTGTGGCTTTCCTGCATCAGAACAATATTGTGCACAGGGACCTCAAACCAGACAACATCTTGATTTCAGAACGCTCAGGTACACCGGTGCTCAAGGTTGCTGATTTTGGGCTCAGCAAAGTATGTGCAGGCCTTGGTATGGGGTCGAGCTGCCGTGATTCGGATGAGACGGaggataaaaacaaaaacatcaacattAACAAGTTTTGGCTGTCGTCGGCTTGTGGATCAGATTTCTACATGGCCCCGGaggtttgggaggggcactacACAGCTAAGGCCGATATCTTCGCCCTGGGTATTATAATCTGGGCCATGACTGAGCGAATCACATTCATTGATGCAGAATCAAAACGGGAGCTGCTGGGTACGTACGTGCGGCAGGGTGCGGACATTGTGCCGGTGGGAGAGGCTCTGCTGGAGAACCCAAAGATGGTGCTGAGTATCCCTCAGCGCCGCCGCTCGCAAATGTCTGATGCACTTCGGAAGCTTTTGCAGGATATGCTGGCCGTCAACCCTCAGGACCGGCCTGACGCACTGGAGCTGCACAGCCGGGTGGGGCAGGTCACCTGCGCCGCTTGAATGCAGACACCTTACTCATGTGCACACAGGCTGTTCCCTACAGGACCCCACATTTCTGCACAGGTGAAACATAGGGACAGCTGCTGTGGAAGACTGTGAAGATTCCGCTGCAAATCTAATGTGAAGAAGAGGATGCCTCCATGCAGTACTTAATAGGATGCAAGAAAttgagttgttttattttattttcctttcttttttctgtttttacacaTAGGTTTGAGGTTCTATTTAGTCATGTTTACAATATTGTCTCCTTATGACTTGAGGGATGTTGTATTTTGTCATTGCTTGAGGTTAATTGCGTCTGTTTGCGAGTGGCGGTTATGTGAGCTAAAGATGGTGTTAAgttgacatttttaaaacaaggtTTACTTGATTTCgatggaagaaaaaaatatccttccttaaaaaaaacaacaaggatttacacatgcacacactttaCATATGTGCACATTTTATGCATCAGCAAACACTAGGAACACTACTTTCACTGCAGACTGGTTCAAATGTTCAAATTATATAACCAAGCTAAGTTTTTCAAGACAGAGTGTCTTAGCTTTTTTTTGCGCGGTTACTGAAACACAGATGAACACACTGCTTTCCGTAACTAAGGAGCATGTAATGATATATtaaactactattactacttaaACTACTACTAGAACTGACTCTTGTTCTGAGAGCATAGCAGTAGCTTATTTCTGTTGGCCTGTATCCTGCCTCCTGTCCTGATGAGTGTAGTTTGTGAATAAACCTAAACCAGAACGTGCTGTTCCTATTTTAGTGCCCACAAACCTTCTCAAACATGCAAGATACAAGatttgagttattttttttatttattattttgagttGATCTATATTTCCCCTCTCCTTTCAGGTCTCATGCAAACTTTGTGTGCCTTGAATTGTGAAACATGTGGAGGTGgttatttacactttattttcagCATATGCAGTATAGTCCTTACACCTTCAACATGCTTAGCTCCTCGATTGCTAATCAAATGCAGTGGAAACCAGTGGGTGCCAGTTGAATACAGAGATTAAACCTCATCAAAAGATTACTAAAGGTCATATAGTCACATGCATTTGCTCAACCACCTGCTCAGCAGATTGAAGGTTTTGTCTTTAATCAGTTGATTGATTGTGCTGGTGTTTGGGGACAGGTTTTAGGGAACAAGTAAATAATATGTGAAGAATATATCTATCTTTCTAGCCCCAATTTCAGAAGACTATCATGATCAGACAATTAAgttgtattgtttgtataccttttttattgattgtaaAGGCCCAGCACACTACAGTTAATCTAAAGTTCATTCCCATTCATGTTCTTGGAACAGAACGAATAGCAAAAAGAAAGTCTTTCATCTCTCAATAAATCCACCATGTGCACGGTTCTGTTATTTGAACGCACAAACCGGTCCACTTATGACTGAAGTATGAATGAGGAAGaaaggtgagtgtgtgtgtgaatgtaaaaaACGAAAGTGTGTGCCagcactcactcacttactcattaCCATGTGCTGTATTTCTACCTCCGTTTTCTTGtattccttttacatttttttccccatctgTTCAAAGCGTTGACAGAAGGATGCCAGTCAAAACCTCTTATTGaaccagtgtttttttgttttgttttttttcccttctccttttgttatttatctttttctgtTGCATTAAATTTACTCTGTATGTTGTTTTCTGCCGAAGCCgaaacttttaaaaactttcTGCTTGTTTGATGCAGGGTTCCAAGAgatttattgagtttttttatttgtttctttgttttgtttttggagcATTTGGTACCAAATCTTCTAGCCCTTCAGCGCTCGTAGAGCTTATTGTTTCTCAGACTCATTCCTAGAGTGCCAGAGAGCGTAATTTACATTGTTACATGGTTATGCATTGTTCTCCTTTAGCACACCTGGTTTGGTTAATGGCTAATGCCAATAGCTAACAGGCAAGTCTTTTTAAGGGTTCAGACAAGGGTTTCTTTACACTGTGCTAAgcagccatgtttttttttttgtgagttgAGGAACTTTGACAGAGACAGTGACCAAGGGTTGTTGTATGTCTGTTTCTTTAATcagcatattttctttttttcccctttatttGCCATCTAATGTCACTGTATCTCTTACATACATTACTACCATTTCCTCAGTATCGTTTTAACTCAAATGCTCTGATCAGTACGTAAAGGCTGGGTATTCACAGTTGATCGCCAAAGGGATTGTGACAAGTGCCGATCAGCTGATccatttttctgtttcttttttatatatataatatagaaagGAAGAAGCGGTCAAATTGAGGCCCtctatttatttctgtcttaGACACAAAGAAATCCCTAAAAATCCTAAATACTTCAAACccgtgtgttttgtgtttactcCTGATGCTGCCTGTAACCCACAGTGTATTACAGGAAGGAGAGACCTGATGCTGCTCTTGCTGTTCTCCATTGTTTTCACTCCATATCGCACCCACGACTATGCAACCTCTCCTTCTTCAGTGAGATCACACTGTGATGTTGCCCTGCTACACTCATTTCACCCACCAGTCAGTCCACCTCTTCTCCTAATTCCACTCCTTCATGCTCTTTGTGTCTCCTGGAAACATTTTGTGCTCCTAATGGCTGTACATTGATTTTCAACTGTTTTGTGGTGCATCATAAAACATGTAGGGGAACATCAGtgaattattaatgttattcttTTGTGCTGgtgatatctttttttttcttctttcttttaataaagagTAAATTCAAAATGC

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08859 STK35, PDIK1, CLIK1; serine/threonine kinase 35

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157531 lncRNA downstream 39792 37145396 ~ 37151238 (-) True G116613
TU157496 lncRNA downstream 66598 37121417 ~ 37124432 (-) True G116585
TU157495 lncRNA downstream 69720 37118500 ~ 37121310 (-) True G116584
TU157507 lncRNA downstream 94035 37096758 ~ 37096995 (-) True G116595
TU157506 lncRNA downstream 95877 37094945 ~ 37095153 (-) True G116594
TU157550 lncRNA upstream 49355 37252216 ~ 37252761 (-) True G116629
TU157562 lncRNA upstream 233022 37435883 ~ 37436186 (-) True G116636
XR_002650723.1 lncRNA upstream 295502 37498363 ~ 37500196 (-) True LOC111193781
TU157572 lncRNA upstream 397963 37600824 ~ 37612287 (-) True G116646
TU157583 lncRNA upstream 437632 37640493 ~ 37684432 (-) False G116653
XM_007249118.3 mRNA downstream 11475 37168975 ~ 37179555 (-) False LOC103043928
XM_007249117.3 mRNA downstream 11476 37168181 ~ 37179554 (-) True LOC103043928
XM_007249121.3 mRNA downstream 24106 37159908 ~ 37166924 (-) True LOC103044934
XM_007249131.3 mRNA downstream 153655 37031892 ~ 37037375 (-) True LOC103047373
XM_007249141.3 mRNA downstream 159667 37023391 ~ 37031363 (-) False LOC103023810
XM_007249113.2 mRNA upstream 32763 37235624 ~ 37244239 (-) True ube3a
XM_022675794.1 mRNA upstream 71462 37274323 ~ 37354392 (-) True atp10a
XM_007249107.3 mRNA upstream 240047 37442908 ~ 37596172 (-) True gabrb3
XM_007249108.3 mRNA upstream 240047 37442908 ~ 37595747 (-) False gabrb3
XM_007249110.3 mRNA upstream 240047 37442908 ~ 37595738 (-) False gabrb3
trnaq-uug_2 other downstream 97960 37092999 ~ 37093070 (-) True trnaq-uug_2
TU157486 other downstream 145242 37041361 ~ 37045788 (-) True G116581
XR_001518677.2 other downstream 159670 37023391 ~ 37031360 (-) False LOC103023810
TU156955 other downstream 1129101 36056563 ~ 36061929 (-) True LOC103028059
TU156811 other downstream 1232601 35955109 ~ 35958429 (-) False LOC103031109
TU157786 other upstream 1178409 38381270 ~ 38384598 (-) True G116805
XR_002650725.1 other upstream 3157540 40360401 ~ 40363960 (-) False LOC103040080
XR_002650728.1 other upstream 4378972 41581833 ~ 41582017 (-) True LOC111193790

Expression Profile