RNA id: XM_007249128.3


Basic Information

Item Value
RNA id XM_007249128.3
length 2935
RNA type mRNA
GC content 0.48
exon number 14
gene id LOC103046153
representative False

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 37041366 ~ 37050408 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGCGCGCGCTCCAGCCCCCCCATGCCACGCGCCATAGTGACGCTTTCATCCGGGTCTCGGCGACGTACACAGTTTCCAACATGGCGGCATCAGctaagaagaagaataagaagggCAAGACTCTAACTCTTACTGACTTCCTTGCGGAAGACAGTAAAGGTTCGACACCACAATATTACCCGCCAACAAAGCCAACCAGTTGGGCAGATGAGACCGATGACTTTGAAGGGGAAGTGTCTACCTCCTGGCACACAGAGGAAGACTCATATCGTGCTCCGCCCATTGATCGTTCACTCTTGCCAACTGCTCCTCGTGCAGCCAGGGAGCCAAACGTTGACCGTTCACGTCTGCCCCGCAGCCCACCCTACACTGCCTTCCTTGGTAACCTCCCCTATGACGTCAGTGAAGAGTCCATCAAGGATTTCTTTAGAGGCCTGGCGATCAGTGCAGTGCGTTTGCCAAGAGAGCCCAATAACCCGGAGAGGCTGAAGGGATTTGGCTATGCTGAGTTTGATGACGTTGAGTCCCTTCTTCAGGCTCTCACTCTGAATGAGGAGAACCTTGGGAACAGACGGATTCGAGTAGATATTGCGGATCAGTCCAATGACAAAGAGAGGGATAGTGGTATGATGTCAGGACGAGATCGGGGCCGTGGAATGGACCTTGGTCCTGATAAGACAGATTCTGATTGGAGAGCTAGACCCAGTGCAGACCAGGATGATGGGCCTCGTAGAGATGACGACTATGGAGAAAAGTCACGTGATCGTTATGAGTCAGATCGGAACAGAGATGGCCCATGGCGTGATGATCGCTATGGCGGCAGAGATCGGTATGATGACCGGGATCGCAGGGACCGGTTTGGCGACCGGGACCGCTATGGCGACAGGGATCGCAGGGATCGTTATGATGACCGAGGCAGCAGAGACTACGAACGTGGAGgattTGACTCTCGTGGTGGAGGCCAGCGAGCATTTGGTAGTGGCTTTAGGCGTGACTACGACGACAAGCGAGATGAAGACCGGTACGAGAGACGGGATGACAGGCGTGAGGAGAGAGCCCCGCTACAAAGACCCAAACTGAACTTGAAACCTCGCACCATCCCAAAAGATGAGGAGCAAAGTGGGGGCACCTCCCCCCAAACCAGTACCACCAGTGCTGGTGGCCGGTCTGCCTCCATTTTTGGAGCCGCCAAACCTGTAGACACTGCTGCCAAGGAGCGAGAAGTGGAGGAGAGGCTGAAGAAGGAACAGGATCGACTGCAGAGACAGCTAGATGATGACAAAGGCAGACCTTCAGAGAGAAGGCCACGAGATCGGGACCCCAGCTGGCGCAGTGAGATGTCTGCGAGTGAGCATGAGCGCACAGGAAACAATTCCACACATCCTGGAGGTCCTAAAAGCCACCAGAGTGATCATTCAGAGAATGAAGTATTTAGTGGCCAGGAGGATGAACCTGCCTCCTCAGAGTTACGCACACCAACCTCACCAAGTCGGGGAGCTCTCCCACTTAAAACTATGCCAGCTCCTCCCCCTAAGGAGAATGCATGGGCTAAACGAAGCACAGGTGGAAGCCCAAATGCCCCATCTACAGCTGCTTACAAGCAGAGCAGCCAGTCAGATTTGGGAGATGAAGAAGAGAATCAGTTGGATGGGGCAGATAGGGAGAAAGGCATGTCTCAAGGGAGAGGAGGACAAGGTCGAGATGGAGAAGGTCCCAACAAAGATAGAAATTCAGTTCAGCCAGTAAGTATGCTGCCCTGTTGATGGATGGTGACCAAGGAGAGGATGAAGATGGTGAGAATTAAGTGGGATTGAAGAAAAGTAGAATGAAATGGAAGCAAGTGAAAAAGAGATTGGAGCAAAATTAAAGATCAAATACTGAATGATCAGGAAAGACAAGTTCCTGCAGTGACTGTGGGGACCACGGCAAAGCTTGCCAGAGTTCTGATCATAATGTTTATCAAGTTTCTCAAACTATACACTCATTTGACTAGTTTTAATTAGGAAAAGCAGTACAAAACTCAGACACTAGATACTCACTTGCATTTAGGAATTTGAAAATCGTTAATTTGCAAGGCATTGTTCTAAATAAATTTGAAAGTATGTAAAATACtgcagttttttgttttctcttgtttGGTGCTATTTACATGACTGGGCACCATGTACAAAGCCTGTCCTGGTTCAGCTGAGAAGGTTAACTGCATGGGCAAATGTAATGAATCCATCCTGTCTGTTTGCTGAAAAGGATTCAGTGTTGGTGGAAAGAGTACATGTTGGAAGTGTAGTCTAGTGTTGGTAAAGACCAGCTGCCTGACTGCCGTTGGTCTCAACTGTCCCATATCGGATGTACACAATTCCAGAGTGCAACAGTGGCTTTTAGATGgttcttttttttggttaaatgaTCTTAACGCAAGGGAGGGCTGACACAGATATTTGTTGCTGGATTATAAATATAACCTTGCCTAAATATCTCCTGGTATTTAACCAAGAAGGAAATTCTATGTCACAGTTTCAAGGTTGTACAGGATGTTTGCTACAGTCATCAATTAGCATCCAGTTAATTTGCAACTGCAGGGCATGCACTTCCCGCTGTGCACATCTGCATTCTGTCACAGATAAGAGGGGCTGTCTGGTGATGCCCCAATGTTTTTAGGCATGTTAGTAGTAACAGTGGCACAATAAAGCTTTTGTGGACGTCATCATAGCCTAGTTCGCCCCTTTGATGACTGTGCACTGCTAGtgctatatttaaaaacaaaaaggacaattttatttaacatatcaCACTGCACTCTGCACTGAATCTGAATCCACTTTTATTGTGACATCGAAAACATGTTCTTtaattactagtgatgcccactGTATGCTCAGAAACTTGTATTATGACTTAATGTATcacagtaataaaatacattacccACTTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157318 lncRNA upstream 27182 37011453 ~ 37014185 (+) True G116466
TU157209 lncRNA upstream 131718 36909203 ~ 36909649 (+) True G116378
TU157190 lncRNA upstream 198129 36840841 ~ 36843238 (+) True G116360
TU157183 lncRNA upstream 206845 36833489 ~ 36834522 (+) True G116353
TU157186 lncRNA upstream 213499 36825294 ~ 36827868 (+) True G116356
TU157376 lncRNA downstream 47846 37098254 ~ 37098533 (+) True G116511
TU157372 lncRNA downstream 71282 37121690 ~ 37124435 (+) True G116507
TU157406 lncRNA downstream 140662 37191070 ~ 37199094 (+) True G116532
TU157426 lncRNA downstream 201799 37252207 ~ 37252770 (+) True G116539
TU157420 lncRNA downstream 214868 37265276 ~ 37272340 (+) False G116536
XM_007249133.3 mRNA upstream 31177 36993982 ~ 37010190 (+) True LOC103021407
XM_007249134.3 mRNA upstream 32743 36993997 ~ 37008624 (+) False LOC103021407
XM_007249135.3 mRNA upstream 51318 36985932 ~ 36990049 (+) True apof
XM_007254219.3 mRNA upstream 69669 36962226 ~ 36971698 (+) True LOC103039123
XM_022675783.1 mRNA upstream 79800 36947965 ~ 36961567 (+) True os9
XM_007249130.3 mRNA downstream 7033 37057441 ~ 37088492 (+) False LOC103046872
XM_007249129.3 mRNA downstream 7034 37057442 ~ 37088492 (+) True LOC103046872
XM_022675785.1 mRNA downstream 60251 37110659 ~ 37121327 (+) True LOC103045245
XM_022675786.1 mRNA downstream 81166 37131574 ~ 37159320 (+) True LOC103044613
XM_022675787.1 mRNA downstream 81167 37131575 ~ 37159320 (+) False LOC103044613
XR_002650721.1 other upstream 327483 36657392 ~ 36713884 (+) False LOC103044253
trnaf-gaa_2 other upstream 792522 36248773 ~ 36248845 (+) True trnaf-gaa_2
TU156853 other upstream 1053307 35982119 ~ 35988060 (+) True G116103
TU156628 other upstream 1307008 35730653 ~ 35734359 (+) True G115931
TU156625 other upstream 1307788 35730653 ~ 35733579 (+) False G115931
TU157374 other downstream 49606 37100014 ~ 37111598 (+) False LOC103045245
TU158023 other downstream 2308463 39358871 ~ 39359388 (+) True G116997
TU158258 other downstream 3749063 40799471 ~ 40803543 (+) False LOC103033994
TU158255 other downstream 3749163 40799571 ~ 40803543 (+) False LOC103033994
TU158846 other downstream 5301399 42351807 ~ 42355784 (+) True G117642

Expression Profile