RNA id: XM_007249133.3


Basic Information

Item Value
RNA id XM_007249133.3
length 3935
RNA type mRNA
GC content 0.42
exon number 25
gene id LOC103021407
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 36993982 ~ 37010190 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGCCGCAGAACAGagagctGAGCGGAATGTAGTATCTGTGCGCtgtctgctggagtttttaacaaaatacagtaatacagaagATACAAACCCTACTCACTGTCTCAGAATGTCTCAGTGGGAGCGCTTGAAGCAGCTCGACTCGGTGTGTTTACAGAAGGTGGATGAGTTGTACAGTCGAGATGATTTTCCCATGGATGTAAGAGACTACCTAGCTCAGTGGATCGAGGACCAAGACTGGGAAGGTGCTTCACGCGACAGTTCCCGAGCAGTGGTTCTGTTCCAGATCTTGCTGGAGAATCTGGATAATCAATATAGTCGTTTCACACAGGAGCGGTGCTTCCTCATGCAGCGCAACTTCAAACGCTTTAAGCAGAACTTTCAGAGATTTCAAGAAGATCCATGTACTTTGGCTGAAATAATCAGCTGGTTCCTGAGGAGTGAGAAACGGATCCTAGAAGATGCAGAGCTAGCACAGGAAGTTCAGATGTTGCAGGTTCAGCCAAACCCTATGGAGACAGAGAGTCAGAGATACGTAGAGAAGAATGTCAGAGAGTTTAAGAACAAAGTTCAGGTAATGGAGCACTCATTGAGATGCCTGGAGGAACAACAAGATGAGTTTGACTTTAAATATCAGACGCACAGAATGGATGGTACAACTGATGGAGCTGAAAGAAACGAGCAGTTAAAGGTGCTGCAAGGAATGCTTAACAGGCTCAATAACTCCAGAATGATATTTCTCAGTGAGTTGTCAGCAATGTTGGATTCTGCTGAATCACTTCTAGCCAAGCTTACAGAGGATCTAGATCAGTGGAAGAGAAGACAGCAGATATCATGTATTGGTGCTCCAGAAGACACAAATCTGGACCCACTGGAGAAATGGTTCACACAGGTAGGGGATGGAATGTTCCAGCTACGCAAGTTCCTGCTGAAGTTGGAGGAGCTACTGGACAAGTTGAGCTATGATGAGGACCCTATCAAAGACCAGAAACCCATCCTGCAGGAACGTGTGGATACTCTATTAACCACCCTGATTAAGAGTGCTTTCATCGTGGAAACCCAGCCATCTATGCCGCAGGGTCGAGGCCCTCTTGTGCTGCGTACAAATGTTCAGTTCTCAGTCAAAGCCAGATTGCTGTTTAAGGTGCCTGAGCTCAACCATGCCATGAAAGTGAATGTGTCCATTGGCAATGATGCTCCTAATGTAAAAGGGTATCGCAGGTTCAATGTTCTTGGAACATCAAGTAAAGCTCTGAATATGTCTGAGAGCATGAATGGGGGCATGGTTGCAGACTTCAGACATTTGACTCTGAAAGAAAAGAAGGTTGGAGCAGGTGGAAAAGGAATTAATGATCTGTCTTTGAGTGTGACAGAGGAGCTCCACACCATACACTTTGAGACACAGTTTGAAATGCATGGCCTGTCAGTCTCTTTGGAGaccACCTCTCTCCCTGTGGTAGTGATCTCTAACTCCAGCCAGCAGCAGAGTGCCTGGGCTTCTGTTCTGTGGTTCAACATGCTCTGCCTTGACCCCAACAACCTGCTGTTTTTTGCGAGCTCTCCTGTAGCATCTTGGAGTCAGCTTGGTCAGATGCTGAGCTGGCAGTTTATAGCATGTGCTGAGCGTGGTCTGAATGAAGACCAGCTTGAGACTCTGGCTCAAAAACTCTTTGGTAAACAACAGAGTTATGACAATTGTAAAATATCCTGGACCAGATTTAGCAAGGAGAACATCAGTGGTCAAAGCTTCACGCACTGGGTCTGGCTGGATGGAATTCTAAACTTGGTCAAAGTTTACCTTTCACAGTTGTGGAATGACGGgtctATCCTGGGATTTGTAAGTAAGGGGAAGGAAAAGGTGTTGTTGAAGAAGAAGCAGGGTGGCACTTTCCTCCTACGCTTCAGTGAGAGCTGTAAAGATGGTGGAATCACATTCAGCTGGGTGGAGTACACTAATGATGGTGAACCCAACGTGCGATCAGTGCAGCCGTTCACCAGTGTAGACCTGAAGCAGATTCCATTGGCAGAGATCCTGCGCAACTTTCAGATCATGGAAGCAGAGAATGCTCCAGTCTACCCACTTCAGTTCCTCTACCCGAACACCCCCAAAGACCAGGCGTTTGGCAAATACTACAATGAGATGACTGGAGagcAAAGTCCatactttaaatacattaaaaccaAGCTGGTCTTCGTGTCAAAAGAGAATGGGTGTACAAGTGTGGCTGGGGAGCCAGTGCCTGACCTGTGCACGCAGCCCAATGACCGCTGCTCTGAAGAAGACATCATGCTGCGAGGGCCAGAGAGCTCACCCATGCTTTCCAACTGTACGAGCAACCCTGAGTCACCCAACGAATTTTTGGAAAACTCTTTAAACGGCCACCTTGAGTTCCcagatttacttaatttacctcCAGATAATTATGATGGCCTAAAGAATTCAGCCAATGGTGTTTCCGAATCCTTTCTGAACATCATTTCAGAGTCGTTTTCCCCAGTTTCTGATCTTACTACATTTCAGGAGTTTCTGAATGATCCACATCTCCTGGAAGGAATAGGCACTTTTTCTGAGTTTTCTGAGGGAATGCCTTTAACTCCCTGAACAATGATCTTCCAATGCTGTCCTGTGGCACTGAGACTGGAAAGTAGCATTCACTAACACAGAAGTCAATCAATAATGTAATGCAATCAAGATTATTAGCCCATTAGCAAAAGAAGATTTATGGTTCGCTTCGTCTCATTGTTTCACAGTCCTGCCCCTAAAGTAATTTTAcactgggatttttttttttctttcactgcCCCAACacagttaaattaatttaattattagtgAAGGggatgttttattatattacattaaaggATAACATACTTGATATAGCTAGGCTACTATTTCTATGCAGTAAATCAGACTAGAGTTGCACTAGATGTTTCACCTCACTGAGTTGTTGGTCTTACTGCAGGAGATAAAGAATTAGCTCTGAACTTGTCTGCCTTTTGCAGTGAAGTGCTTTTGCAGTGAAGTGCTTTTACCATGCAGGCAATACAAAATGCTCCAGTTAGAGCTCGTAAAAGAGCTTGTAAAAGTCAGTTCTGATTACAAATCCAAAACAagcaatgtgattttttttttgtatatagttgtaTGTAAGTTTTTTAAAGATGACCTGGTTTCCAAAAGGCATGTGAGATAAAAGTAGTTTATGTTGTGTGAAGTGACGAGCTTCTGTAGAAAGAGTAAATAAAATGCAAGTGAAGAGCGGGAGTAGAGGGAGTAGTCTGTCAGAACAGTCCAGCAGTTCTGTTTGATTTGgattaaaataaaggaaatgtTGCTTTTTACTCAGCAAAGTGTTTGTATTCAGTGAGTGCAGGAAAGATTCCATATGCTGCTATAAAACATCATTACTTAGGGAGAAAAACTATTCATATAGCAGCAGTTTACTAACAATGTTAGTAAACTAACAGTGTTATAAAAGGACACTGTAACATCTGTAGAGCTTAAATCTTACAAGTGATCAATTTTCCCCTGTTACACTTTCTCCCACGTGAATGCTGCTTACGTTCCCAGTCATGGTCTTTATAGCTACATGTTTGATGTTTAGTTCTTACTGGCTCGTACTCAGCTGCTCCAAAACCCTCAGCCTTTCATTCCTTTTGATGTTGACTCATTCTTCTTACGTATTCATTACATACAATATCAAATCTGTGTAATCTTTGATTGCAACTTTTTTTGATCATAGAGCTTTTTAAACAAACcttaatcatacatttaaaaatcgcTATCTCATAATCATAGAGCTAAGTCTGACATAAAAAGCTTGCAAAGAAATGGGTAATCTGTCTAGGGGAAagcagtgatttttttatgaatCAATGTAACATTTCATCGATTTgctgagaaataaaaagataCATTCCTTCCGTTGTAA

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0050794 regulation of cellular process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0005488 binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157209 lncRNA upstream 84333 36909203 ~ 36909649 (+) True G116378
TU157190 lncRNA upstream 150744 36840841 ~ 36843238 (+) True G116360
TU157183 lncRNA upstream 159460 36833489 ~ 36834522 (+) True G116353
TU157189 lncRNA upstream 162406 36823464 ~ 36831576 (+) True G116359
TU157318 lncRNA downstream 1263 37011453 ~ 37014185 (+) True G116466
TU157376 lncRNA downstream 88064 37098254 ~ 37098533 (+) True G116511
TU157372 lncRNA downstream 111500 37121690 ~ 37124435 (+) True G116507
TU157406 lncRNA downstream 180880 37191070 ~ 37199094 (+) True G116532
TU157426 lncRNA downstream 242017 37252207 ~ 37252770 (+) True G116539
XM_007249135.3 mRNA upstream 3933 36985932 ~ 36990049 (+) True apof
XM_007254219.3 mRNA upstream 22284 36962226 ~ 36971698 (+) True LOC103039123
XM_022675783.1 mRNA upstream 32415 36947965 ~ 36961567 (+) True os9
XM_022675784.1 mRNA upstream 32415 36947966 ~ 36961567 (+) False os9
XM_022675782.1 mRNA upstream 74439 36904618 ~ 36919543 (+) False LOC103040047
XM_007249126.3 mRNA downstream 31176 37041366 ~ 37050408 (+) True LOC103046153
XM_007249128.3 mRNA downstream 31177 37041367 ~ 37050408 (+) False LOC103046153
XM_007249130.3 mRNA downstream 47251 37057441 ~ 37088492 (+) False LOC103046872
XM_007249129.3 mRNA downstream 47252 37057442 ~ 37088492 (+) True LOC103046872
XM_022675785.1 mRNA downstream 100469 37110659 ~ 37121327 (+) True LOC103045245
XR_002650721.1 other upstream 280098 36657392 ~ 36713884 (+) False LOC103044253
trnaf-gaa_2 other upstream 745137 36248773 ~ 36248845 (+) True trnaf-gaa_2
TU156853 other upstream 1005922 35982119 ~ 35988060 (+) True G116103
TU156628 other upstream 1259623 35730653 ~ 35734359 (+) True G115931
TU156625 other upstream 1260403 35730653 ~ 35733579 (+) False G115931
TU157374 other downstream 89824 37100014 ~ 37111598 (+) False LOC103045245
TU158023 other downstream 2348681 39358871 ~ 39359388 (+) True G116997
TU158258 other downstream 3789281 40799471 ~ 40803543 (+) False LOC103033994
TU158255 other downstream 3789381 40799571 ~ 40803543 (+) False LOC103033994
TU158846 other downstream 5341617 42351807 ~ 42355784 (+) True G117642

Expression Profile