RNA id: XM_007253314.3


Basic Information

Item Value
RNA id XM_007253314.3
length 3317
RNA type mRNA
GC content 0.47
exon number 23
gene id LOC103022276
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 32710506 ~ 32728257 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAAGGCCAATGGCGGTGTGGCCAGTTTGAGCCCCAGCCGGATAAATCGCGCGCTGCTGAAACTTGACTCCTCTTTCACACACCAGGAGGGTCTGAGGGACGCGCGAGGTGATCTGTGACTGTCCAAGATGAGGATCGCAGTGATTGGCCAGAGCCTTTTTGGACAGGAGGTGTATAAGGAGCTGAAGAAAGAGGGCCACATCATTGTTGGTGTATTTACCATACCTGACAAAGATGGCAAAGCCGACCCACTAGGTGCTGAAGCAGAGAAGGATGGTGTACCAGTGTTTAAGTTCCCACGCTGGCGACTGAAGGGCAAGGCCATTGATGAAGTGGTGGATAAGTATAAGGCGGTGGGCGCCGAGCTCAACGTTCTACCCTTCTGCTCCCAGTTCATCCCAATGGAGGTGATAGACCACCCAAAACATGGCTCCATCATCTACCACCCCTCACTGCTGCCCCGCCACAGAGGAGCCTCTGCCATCAactgGACTCTCATTCATGGTGACAAAAAAGGTGGGTTCACAGTGTTTTGGGCAGATGATGGACTGGATACCGGCCCAATCCTGCTGCAGAAGGAGTGTGTGGTGGAGCCTGATGATACAGTGAACACCATCTATAAGCGCTTCTTGTTTCCAGAAGGAGTAAAAGGGATGgtGGAGGCAGTCAAGTTAATTGCAGAAGGTAAAGCTCCCAAAATTAAGCAGCCAGAGGAGGGAGCAACCTATGAATGCATCCAGAAAAAGGACAATTCAAAGATTGACTGGAATCAGCCTGCTGAGGCCATCCATAACTGGATCAGAGGAAATGATAAGGTCCCTGGGGCCTGGGCCGAGGTTGATGGAAAGaatGTAACATTCTATGGCTCAACATTGGTGGATAACGGCTCTACAGCTAATGGTCAGCCTCTGGAGATCCCTGGGGCCAGCCGTCCAGGTCTGGTCACCAAGAATGGCCTGGTCCTTTTTGGGAATGATGGCAAGACGttgttgGTGAAGAACCTGCAGTTTGAGGACGGGAAGATGATTGCAGCTGCTCAGTATTTTAAAGCTGGCTCCAGCTCTGCTGTGGAGCTgacagaggaggagaagagtTTTGCTGAACAAATGAGGGCAGTGTGGACGAGTATTTTGACAAATGTGGAGAAGATTGATGACTCTACTGACTTCTTTAAGTCAGGAGCTGCCTCTATGGATGTTGTCAGGCTGGTAGAGGAGGTTAAATTGAGGGCGAGtcagctgcagctgcagaacGAGGACGTTTACATGGCGACAACCTTTCAGGAGTTCATCCAGATGTGTGTGAGGAAGCTGAGAGGAGAAGATGCTGAGGAGGAGCTCGTCGTTGACTATGTGGAGATGAACGTGAACAACATGACCATTCGAATGCCCCACCAGCTCTTTATAAATGGAGAGTTTGTGGATGCTGAGGGAGGAAAGAACTACAAGACTATCAACCCCACCACTGGACagGCAATCTGTGAGGTATCTCTGGCTCAGATCTCAGATGTGGAGAAGGCTGTAGCAGCAGCTAAGGAGGCTTTTGAGGAAGGAGAGTGGGGCAAGATGAACCACAGAGATAGAGGCAGACTCATCTACAAATTGGCAGATTTAATGGAGCAGCACCAAGAAGAGCTGGCCACCATTGAGTCTATAGACTCAGGAGCAGTCTACACACTTGCTCTCAAAACTCATGTTGGCATGTCCATCCAGACATTCAGATACTTCGCCGGCTGGTGCGACAAGATCCAGGGTTGTACCATCCCAATCAATCAAGCTCGTCCTAATCGCAACCTGACCTTTACCAAGAAAGAGCCAATCGGTGTGTGTGCCATTGTGATTCCATGGAACTATCCTCTAATGATGCTGGCCTGGAAAACCGCAGCTTGCCTTGCTGCTGGAAACACTGTGGTTCTGAAACCAGCGCAGGTGACCCCTCTGACTGCGGTGAAGTTTGCTGAATTGGCTGCGAGAGCAGGATTTCCCAAAGGAGTGATCAATATCCTGCCTGGCTCAGGCTCCCTGGTTGGCCAGCGGCTGTCAGACCACCCTGATGTGCGTAAACTGGGCTTTACTGGCTCGACGGAGATCGGCAAACAGATCATGAAGAGCTGCGCCGTCAGTAATGTGAAGAAGGTCTCTCTGGAGCTGGGTGGAAAATCCCCTCTTATTATTTTCAGTGACTGTGATCTGGACAAAGCTGTGAGAATGGGGATGAGTTCAGTGTTCTTCAACAAAGGAGAGAACTGCATCGCTGCAGGCAGACTGTTCGTAGAAGAATCCCTACATGACACTTTTGTCCAGAGAGTGATTGAAGAGGTGAAGAAAATGAAGATTGGTGACCCGCTGGACCGCTCCACAGACCACGGCCCCCAGAACCACAAAGCTCATTTGGACAAACTGGTGGAGTACTGTGAGAGAGGAGTTAAAGAGGGTGCTACACTCATATGTGGAGGGAAACAAGTCAATCGCCCAGGTTTCTTTTTTGAGCCCACTGTGTTCACAGATGTGCAGGACCACATGTACATTGCTATTGAGGAGTCATTCGGCCCTGTCATGATCATCTCCAAATTTAAGAATGGtgatGTAGACGGAGTGCTGCAGAGGGCTAATGCTACAGAGTACGGTCTGGCATCAGGAGTGTTTACACGGGATATCAGTAAGGCTCTTTATGTGAGTGAGAGGCTTCAGGCTGGAACAGTGTTCGTCAACACCTACAACAAAACTGATGTGGCCGCCCCCTTCGGAGGCTTCAAGCAGTCCGGCTTTGGCAAGGATCTGGGTCAAGAAGCTCTCAATGAATATTTGAAGACTAAAACTGTGACAGTCGAGTATTAACATGGTTAGATGATTAAGTAAACTTTGCCAGAGGatacacatatataaagaggaatatatgaatttcactgTTCTGATCTGAGAACTACTGAAATGCTACTAATATGTGAAATGCTTAACTGCATAAATCtttaagtgaactgaactgtaAGATTATGTATTTGACTGCACCTCAATTTTAATGAAGCCTTTTATATTATGCTATTAGTTGaatttttgacacatttttaaTGCTGCCTCAGACTGGTTCattttgtaaattaattttCTCTATTATTGGCTAAAGGTGAAGCTGATAGTAAAAAAGTGCTTATAAAAAAACCTTCAGATTTCTGTTTTACAGCTATTGAAATATTGAACATAGACTATATTGAAAATACTGAACTGTATACTGATTTTTTGACTACTTCCGTTCTTAAGTGCAGTACTACTGTCTACTACTGTGTcacaaaaacatataataaattcACTTTGGGATGTA

Function

GO:

id name namespace
GO:0009258 10-formyltetrahydrofolate catabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0006730 one-carbon metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0032259 methylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0016742 hydroxymethyl-, formyl- and related transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0016155 formyltetrahydrofolate dehydrogenase activity molecular_function
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor molecular_function

KEGG:

id description
K00289 ALDH1L; formyltetrahydrofolate dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155527 lncRNA upstream 13609 32696304 ~ 32696897 (+) True G115145
TU155517 lncRNA upstream 92472 32615963 ~ 32618034 (+) True G115137
TU155503 lncRNA upstream 100641 32577378 ~ 32609865 (+) True G115127
TU155472 lncRNA upstream 389861 32245266 ~ 32320645 (+) False LOC103025619
TU155477 lncRNA upstream 416565 32292488 ~ 32293941 (+) True G115106
TU155719 lncRNA downstream 57625 32785882 ~ 32795500 (+) True G115278
TU155721 lncRNA downstream 63065 32791322 ~ 32795500 (+) False G115278
TU155733 lncRNA downstream 72642 32800899 ~ 32801184 (+) True G115288
TU155799 lncRNA downstream 625075 33353332 ~ 33357929 (+) True G115347
TU155804 lncRNA downstream 631880 33360137 ~ 33363038 (+) True G115350
XM_007253315.3 mRNA upstream 65722 32631259 ~ 32644784 (+) True LOC103022786
XM_007253419.3 mRNA upstream 109671 32591860 ~ 32600835 (+) True zxdc
XM_007253317.3 mRNA upstream 120992 32450736 ~ 32589514 (+) True cpne9
XM_007253319.3 mRNA upstream 262370 32428981 ~ 32448136 (+) False mtmr14
XM_007253318.3 mRNA upstream 262370 32428982 ~ 32448136 (+) True mtmr14
XM_007253312.2 mRNA downstream 1082 32729339 ~ 32746968 (+) False LOC103021538
XM_007253311.3 mRNA downstream 5247 32733504 ~ 32746968 (+) True LOC103021538
XM_007253301.3 mRNA downstream 669751 33398008 ~ 33407467 (+) True LOC103045271
XM_007253300.3 mRNA downstream 947800 33676057 ~ 33726617 (+) True LOC103044965
XM_007253299.3 mRNA downstream 1002181 33730438 ~ 33767084 (+) True LOC103044649
TU155511 other upstream 99303 32610449 ~ 32611203 (+) True G115133
XR_002650704.1 other upstream 104774 32604957 ~ 32605732 (+) True LOC111193763
TU155443 other upstream 575638 32129305 ~ 32134868 (+) False LOC103027407
TU155369 other upstream 816155 31893285 ~ 31894351 (+) True G115024
TU155153 other upstream 1829953 30850309 ~ 30880553 (+) True G114841
TU156039 other downstream 1367660 34095917 ~ 34096865 (+) True G115510
XR_001518742.2 other downstream 1602741 34330998 ~ 34338917 (+) False rbm38
TU156151 other downstream 1652047 34380304 ~ 34391959 (+) False LOC103038162
trnaf-gaa_1 other downstream 1699211 34427468 ~ 34427540 (+) True trnaf-gaa_1
TU156333 other downstream 2192444 34920701 ~ 35008942 (+) True G115736

Expression Profile