RNA id: XM_007253315.3


Basic Information

Item Value
RNA id XM_007253315.3
length 4355
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC103022786
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 32631259 ~ 32644784 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCCGTGTGGATCCAGCCAGTCTGTAGCAACACGGCGCGGCGTGGCTCGAGGGCGCCTTACTCATTGAGAGCGCGCGTGCTGTTTGTtggttttttaaacacattctctttttttttctcttgcacCGGAATGCATCATTTACACGAGGATATATCCGTGCTTTCTGCGAGGAAAAGGTTCAACCTGGATTTTTCCTGTATGTGAAAAGCATGCCACTTCTTTCTTGTTGTGAGAGGGCATTCTCACTTCACTTGGACTCCTTGACTTCCTCATAATCGGAGGACTAGTCAGGTTATTGGGAATCTACCTTTAAAAAACGGACAAACTCATTCATATCTAATTTATTAGAGGGCTGATCCAGGGAATGGTGGATTACACTCTCAATATTGAGGAGAACTTCTTGTCTTACGTTGACATAGACCCTGCTTCACCTGTTGTGTACCATTCGTCGGACATGGTGTTAGACTCAAGCAGCTACCAAGTGATGCCTTCGCCATTTTCTGAGGACGACCTCAGTGACGCATCGAGTCTGCGTTCCTGCTCCTCGCCAGATTCCCAGGTCCTCAGCTCCAGCTATGGCAGTTCGTCTAGCGCTGAGAACCAGGACAGCATTCTCAACTTCCTGCTGTCCCAGGCTTCTTTGGGTAATGGTACCAATGCCGAAGTGAGCCCTGGAACCCCAACCACTTTAGCAAGTGTCCTCTGGAACTCACAAAGGGAGAATGTAAAGGAAGAGAACTTTGACTTTCCGATATGGTCCTCAGCAAACATGGAGGCATCTGTTGAGCCCTTCCAGCCCACTCTGGAGGAAATTGAAGAGTTCCTAGAAGAGAACATGAGTGGAGTGGTGTCCCTTAAACATGAACCTAGAGAGGGTGGCTCACCCTTAGGGCTGGAGCTAGAGCTTGACCTTGGGATGGCAATGGGAGTGGAGGCTATGGAGGAGGCCTCACCCATGGCGCCTGAGACAAGCACCACTGGATCACAGCAAAATTCCGACCAAACCGTCCCAGTGGCTGATCTTCCAGGGAGCTCTGAATCTGCTAATGAGACCAAAAGCATGCACAGTAGCCCAGGTACTTCTGGTACAATAGCACACGCACAGGGTATTATAAAGAAGGAGGCACAAAGTACATCTGTCTCCACTAAGAATGAAACTAGCTCCAGTACCAAGAGTGATAACAGCGGCAGCACTGGAGTACCAGTAATTCTCCAAATCCAACCAATTCAGATCAAACAGGAAAATCAGGGAGCTAATGTGCCAGCCACCCTTTCCCCAGCAACTCAGTctctagctgctgcagacatcaAAATTGCCCAGCTGTTGCTGAACATCCAAGGGCAGACCTTCGCACTGGTCCCTCAGTTTCTTCCCACCGCTGGCTCCTCAGCTTCCACCTGCCTCAGTGCTTGCACTAAGTTTGTGCGGATAGCGCCTGTGCCCATTGCAGCGAAGCCTATTGGTAGCGGAGGGGATGGTGTTGCCTTGGGTGGAATCCAAGAAGGACTCTTAGCTGGAGGAGCGCAGAAGTTCCCCAAGAATCCAGTGGCAGATCTTATCAAAATGCACAAGTGCAACTTCCCAGGCTGTGCCAAGATGTACACCAAGAGCAGCCACCTGAAAGCGCACCTGAGAAGACATACTGGAGAGAAGCCCTTTGTCTGTAACTGGCCTGGCTGTAGATGGAAGTTTTCCCGCTCGGATGAGCTTTCCCGTCACCGGCGGTCCCATTCCGGCGTGAAACCGTACCAGTGTCCTGTGTGTGAGAAGAAGTTTGCTCGCAGTGACCACCTGTCCAAACACATCAAAGTCCACCGCTTTCCTCGAAGCAGCCGGACAGTCCGTCCAACTGCATGACGAGCCAACTACAAGACTCACTAATGCACAGAGGCAGGGACTGGGAGACAGATctccctgtgtttgtgtgtgtgtgtatatatgcacGTGCTATGATTTCGTGAAGGTGTACACACAACCCcccccagtgtgtgtgtatagatgggAGCGAGGTGACTGATGGAGGTAGCAGGAGAATCAGGCCTGAGCATTTGTTTGACTGCCTTTCACAGACAACAGTGCATGCATACACAGAATCACGACACACAGTCTCCTTCGCCCTtgtatttatagtgttttaGGTTAAACCTTGGTGACGAAGCATTGGCAGCGGGTCACCTCTGGTGCTACACTTTGTTTGGATTACGAAGAGGACAGGACTGGAATGAATACAGAAACTGCTACTAAGGGATCAGCCTATCCAAATAAGCTATGgggacacttttttttctaaatgacaCTAACTTTGAGTGAAGGTTAAGAAGAGCGGAATGACAATAGAAACGCAAAAAAGTCCTATCAGAGACAGTTAGAAAACTAAAATGTGCACAGTGTTgattgtacatatttatatgtatgCCTTCAAATCAGTGTTgccattttcttgtttttcttgttgagaggtgttttgtaaaaaaagatatttgCATTTTCGTCAGTATCGGCTCTTAACGGCTCTACTGTGTTTCGAAACGTCCTTTTTGGCCTTAGTCAACCACAAAGCTCTTATCTCAGGTGTGGCCTGGGTGCTGGATGAGGGGCTTAAAGGACAACTTGTAAAGCAAGTTATCACATGATTCAGACTGTAATGAAATCAGGGAGATATAGACCATAATAACAGTAATGCACTTAATTCAAATTGTTTGTACGCACATCATTTgtacagtcatgtaaaaaaaaaaaaaagcacacccAATGAAAACCTTTGTTTTATGGATATTAGGACGatattaagatatataaatgagtatatacagtaatacaaGGATCATTAGTGCCTTTTGGCCctcaaaacataaataaaatgacttatgagttatgagtttatcatatttataagacttcagaCTATACAGACATCATATTGAACCAACTTAATAAGCTTTAATGACAGCTTAATAAGCTTGACAACTACAGGGTGAACAGTTTTAGCTAAAATTGGCTTTTGGTGGAAACATGATTGACATGAATTGTTTCATAGATGATAttctagaatttttttttactgacagGATGGAAAGCATAGGGTTTACATCAAATTTTTAGtaaatgaatattattaatttctgaacatGCAGTGTGTATCTTCagtcccttaaaaataaaaaagtatgacAGTTGTTATGAAAATAGCtccattaaaaagttatttatccTAAATTGTTTTTCACGTGAGGAGAAAAGATATGCTAAGAACACATGCCcaggtttttaaatgtgtttaaaaagacaaaagtttTCATGGCATGCctaatttttttcatgactgtactgtataaaaatataatacaaagtATAGTACATTAAATCAGCACAAGTATTggcaaaaattaaagaaatcgaaAGACAATCTGTgatttttatatgtgtattacTTGTCGTGAAAGATGCAGCCTACATCTGCAGCTGCTATGTGAGGAACGATGGCACTTAATTAAACTTGATGAGTAAGACTCAGCTCACTCGACATTAGTAAATATACTGGAGCCTTTGGCCCGAGAGCCGGAAATCTCTTTCTTTTATCATTTCTGTGAAAAAAATCTGCCTCAGTACTCCGACCTGTTACTGGATTCCCTGCGTATCATTGTGCCACAGTGGCCTGTCATTGTGTACACTacacccccacccccaacccccttctcacacaaacacaatcatGCCCTTCCCAGTGTTTCTGTACCTTTTTAATTATGGTTATGTTACAATGTGAACACTATGTACTGTAACAAGCCAAATATTACACTTCAGCACTTGTCTGGGATTGTTCATGTTCATGCTGGTTAGGAAGGTTGGCGAGGTGCTTGAGGGCAAAACAGTGCTGAGTACTGAAGCTGCATGTGTAAGtcgagtttattattattttaagcactTCTGAATCATCTAATAGAGTATGGGGGAATACTTTCTTCCTTGTGTCACTTGTATGTTATCTGTCTGACCAAGGGCAcactatactgtacatacattttGGCATTCCTTCCATTCACAGACTGATTTGTATAAATGCTTGTTGATACACGGGTGTTTTAGGCCACATCCTATGAATGTATGTAAATAAAAGGGACATGTACATAGCTGCATCCGTACAAGAACGAAAGAAAATTaaagaagaaggaagaaagaaaattgGATAGCTAAAAAGTTGGCAATCATACTACAAGACTGTTTATGGTTGTAATTTTACTGTGTAATCCTAAATGTGTATATAGTAATgtttcagtataaatatataaatatatatatttttcccccTTGTACACAAAACCCATTTACAAATAAAGCATTGAAATGTAAATAA

Function

GO: NA

KEGG:

id description
K09210 KLF15; krueppel-like factor 15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155517 lncRNA upstream 13225 32615963 ~ 32618034 (+) True G115137
TU155503 lncRNA upstream 21394 32577378 ~ 32609865 (+) True G115127
TU155472 lncRNA upstream 310614 32245266 ~ 32320645 (+) False LOC103025619
TU155477 lncRNA upstream 337318 32292488 ~ 32293941 (+) True G115106
TU155455 lncRNA upstream 464207 32156019 ~ 32167052 (+) True G115093
TU155527 lncRNA downstream 51520 32696304 ~ 32696897 (+) True G115145
TU155719 lncRNA downstream 141098 32785882 ~ 32795500 (+) True G115278
TU155721 lncRNA downstream 146538 32791322 ~ 32795500 (+) False G115278
TU155733 lncRNA downstream 156115 32800899 ~ 32801184 (+) True G115288
TU155799 lncRNA downstream 708548 33353332 ~ 33357929 (+) True G115347
XM_007253419.3 mRNA upstream 30424 32591860 ~ 32600835 (+) True zxdc
XM_007253317.3 mRNA upstream 41745 32450736 ~ 32589514 (+) True cpne9
XM_007253319.3 mRNA upstream 183123 32428981 ~ 32448136 (+) False mtmr14
XM_007253318.3 mRNA upstream 183123 32428982 ~ 32448136 (+) True mtmr14
XM_015606908.2 mRNA upstream 274821 32324063 ~ 32356438 (+) False setd5
XM_007253314.3 mRNA downstream 65722 32710506 ~ 32728257 (+) True LOC103022276
XM_007253312.2 mRNA downstream 84555 32729339 ~ 32746968 (+) False LOC103021538
XM_007253311.3 mRNA downstream 88720 32733504 ~ 32746968 (+) True LOC103021538
XM_007253301.3 mRNA downstream 753224 33398008 ~ 33407467 (+) True LOC103045271
XM_007253300.3 mRNA downstream 1031273 33676057 ~ 33726617 (+) True LOC103044965
TU155511 other upstream 20056 32610449 ~ 32611203 (+) True G115133
XR_002650704.1 other upstream 25527 32604957 ~ 32605732 (+) True LOC111193763
TU155443 other upstream 496391 32129305 ~ 32134868 (+) False LOC103027407
TU155369 other upstream 736908 31893285 ~ 31894351 (+) True G115024
TU155153 other upstream 1750706 30850309 ~ 30880553 (+) True G114841
TU156039 other downstream 1451133 34095917 ~ 34096865 (+) True G115510
XR_001518742.2 other downstream 1686214 34330998 ~ 34338917 (+) False rbm38
TU156151 other downstream 1735520 34380304 ~ 34391959 (+) False LOC103038162
trnaf-gaa_1 other downstream 1782684 34427468 ~ 34427540 (+) True trnaf-gaa_1
TU156333 other downstream 2275917 34920701 ~ 35008942 (+) True G115736

Expression Profile