RNA id: XM_007253319.3


Basic Information

Item Value
RNA id XM_007253319.3
length 5230
RNA type mRNA
GC content 0.43
exon number 18
gene id mtmr14
representative False

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 32428981 ~ 32448136 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGGTCACATGACCGCCTGACTTTCCTGTTTACTACTCGCTTCCATTCGAAATCTGAAACTCGGATTGCAACAACTCGCAGCGGCCGCGGATTACTTCACTTCACTGCGCTACACgataaaacagcctttttctCACGCTATCGGTAGCTTAGCTGTTCGTGGAGGATGTTAAATATCCTGTGTTTGTGCTGTAATTCTGCTGAAATGAAGCTGTGACAGGGGAGAGCGTGACTAGGCCGGGAATCCTGCGGGTTTCCTGAGTGGAGTGTCCGCTCATGCTCGCCTTCTCTCCCTGGTGGTCGCTCGGTGTGTACTCGGGCTGAGATGAAACAGAGGAAAGGTCGAGCAGCTTCGTACTCAAGCAAGGCGGATTCCCGCTTCTGTTTTAAACGGACAAACCAAAGGGCTGTTGGTGTGTACGCTGTGTAAGCTGTGTGGTTGATTTTATGCCCtttcttgctgtgtgtgtgttgtggtaaCTCAGAGCCGCGGTGAAAGGCTCGGTGAGCTCGGCACCGCTTATTAGCTCGCCTGGTGTGAGGGGTTAACTAGCTCCGCGGCTAGTTAACGTATCAGTAGTGTTAGGGGGGATCAGCTCGCCGGTACCCTGAACACTAGGCGCCTCTACGTCTCCGGCCCCCTTAAGCGGGCGGTGAGGAAGAAACTGGCCGGGAAGGGATGGCCTGGAGGCTCGTCCCGGCCTCACGGAGCGGCGCTGTTTGAGGGAGGGCAGGTCCGGCTGGAGAACACGGCCGGCCGAAGCGCGATGATGGCCGCGTCAGCGTCTGGAGCCTCGGCCCGAAAGAGCGAGGAGATCGCGGATCTGATAGACTTGTTTTCCAAGACCCAGTACCGGGCGAAGGAGGTTACTCCACGGgTGGAGAGAATAGAGAAGCGGTGCCTGGAACTGTTTGGACGTGACTACAAATTTAGTGTCATCCACAATAGTAATGGTGAGGTGTGTGGACACTACCCTCGGCAGATTGTGTACTTGGAGTATGAGAGCACTGAGCCCAACAAAGAAAGCTTTGAAAGTACAGTACAAATCAGTAGGCTGCAGGATCTGGTGAACCGCAGTAAGCTGGCACGCTGCAGGGGGAGATTCGTCTGTCCAGTCATTCTCTACAATGGCAAGCATGTATGTCGGTCATCCACGCTTGCAGGGTGGGGGGAACTGTACGGACGCACCGGTTACAACTACATTTTCTCAGGGGGATCTGATGACACGTGGGCAGAATCAGAAGAAGTGCCAGATGATGACACTGTGGTCCGAAATGGAGATTCACAGCTGTTTGATAAAGTGAGGGGCTCGGACATTAAGCTGCTGAAGTATCTGTCCGTTCGCTACATCTGTGACCTCATGGTGGAGAATAAGAAGGTCAAGTTTGGCCTGAATGTCACCTCTTCCGAGAAGGTGGATAAGGCCCAACGCTATGCAGATTTCACACTTCTATCTGTGCCTTATCCAGGTTGTGAGTTCTTTAAGGACTACAAAGACAGAGACTACACAGCAGAGGGTCTGGTATTTAACTGGAATCAGGACTTTGTGGATGCTCCCTTGACAATCCCTGCCTGTTTTACTAAGAATCTGAACATTGACTGGAGTGAATATCAGTCTTGGGACCTGGTGCAGCAGACCCAGAATTACCTGAAGCTGCTTCTGCACATCATCAACAGTGATGATGAGAGTGGACTGTTGGTGCACTGTATATCAGGCTGGGACAGAACTCCACTCTTTGTGTCCCTCCTCAGACTCTCTTTGTGGGCTGATGGTGCTGTTCATGCCAGCCTGGAGCCAGCAGAGATTTTATACCTGACCATCGCCTACGACTGGTTCCTTTTTGGTCACATGCTGCCTGATCGTCTCTCTAAAGGGGAGGAAattttctttttttgcttcaATTTTTTGAAGCACATTGTCTCTGAGAAGTTCTCAGTCATTAGGAAGCAGAGGAGGAAAAACTCACAATTCAAAGACACTGATTTCACAGTGGATGACCTCTGCCAGCTAAAATCCAGAGACAGGGGCAGTGTGACCAGTTTAAGTAGTGATTTCTCTCTGATCACTGAAGATACAGCTGGTCCCTCTAGTCTGCCTCCTGAACCTGTGGACCTGCTCTCCACAGCGCCTCAATTCTCCAGCGGGAGGAAAGCTACAACCTCATCTCCTCAGACTGTGTTTTGGAATAGGCCATCTGAGGATCGACTACCTCATCCACTCTCAGAGGGCAGGTCCTCTAGTTCCTCATCTTCCAACCAGTCAGATCAGGGCTTCATCCGTACAGGCAGTAGTCCACTGGCTGTGCCAGGGAGAAGGTGTGTGTATGGATCGGAGAGGCAGGCACGATTGGAAGCAGTAAGAGAGGTGTTTCTGGCAGCCTACAGCTCTACAGTGGGATTAAAGTCTTCCTCTCCCGGCTCATCCGGAGCAATCTCTGGACTGCTGGAGCAGTTTGCCCGTGGTGTCGGCCTTCGAGGCACCAACTCCATCGTCTGAGTCCAACCTGCCCTTTCTAGCTTCCTGTTCTCTGATCTGTCTCCTTGATTCActtgtttctgtctgtctgtccattctTGCTGTCTGTTGGCAATGAATCACATAGAGAAGTGTTCCCCActcattctctttctgtctctttctctctgatcaatgcaatattttttttactttaaaaaatccaTCTTTTCGCTCCACCCTAATTCATTATCCACTGCATTGAAGTCTTGTGTAGTCTCTGTATTTCCCAGTTCCTTCAGTAAAAGATCACATCTGTTTAAATCCAGAAACCACACATTTTCCACATTCTGCTTTTACATACTGTGTTCATAGAAATACACTGTTTCCATCCCCTCCCCCTTCATTGACAAACtactgctttttcttttttccttcccATTCCCCTTGTTTTCTTCTATCCCTCTGTGTGGGCATCATTCCACCTGGACTTACAAAGGAAAAGTGCCAAACCTTAACCTTGGGGTtgctttttattataaatttctttttatttaaaaaaaaaatactttttactttgttttacaCACCAAATCTGACCATTATGGTGCCTCTACAGGCTTTTaagcttaaaaataatttacagttcctttcttttttttgtctttctttctagttttgcttttgtttgttgATTGAAATATGTAGGAAAATGTGAGGGCAAGGAATGAACACAAAAAGGGAAAAGTGTTTCTTTTAGTTCTTGTCTTGTTGCTATAGCAATATTGCGGCCccaagaaaatggaaaatgggcTTTTGAACAaatctttaaaatgtcttttctCTTTGGACCTCCAAGGCTGTGAAGGAAAAaagaaacgaaaaaaaaaaaaaaaacaagcctcATAGCTGTGTAACTGTAAGAGGAAAAACTTGTCTGTTCTTTTCCTTTGGGAAAAGTAAGTGGCATAAGCTGCTGGTCAAGTTTTAGCCCAGATATTTCTTTAGAAATAGCACTTGGAAAGAAGCTAGAAATGTGACGGTGAGATCTATTTTTAGTTGTTGCAAAAACTACCAATTCTAATAGTTTTAGATTAATTTTCCTTATGTTAATTTTTGGAGGCACCTCTTCTTGTCTTAAgatctttttttaactttattttctaaaactTGAATCTGATCTGGAATATTAAGAGTAATATCAGCAGGTATGAATCTGGCCTGGAACTAAATGGGAACACACTACAATTTTACCACTTAATCTCCTGTACAAGATATTTTCATAATTCAGTACCATTTCCTCATCATACAATTGTTTAATGCTCAGTTGAACACTTTGCCAGttgtttaatgtaatattatgCCTTTGTTCTTAACTAGATGTTACTTTCCTACTTATAATAATGCTTCAACAGCCACTGAAGTGTACAATCGACCCAATTAAAGGCCACGTCAGTACCTATAACTGGCAGATTTGATATttcaaaaacaaaattgcaactgtttaaatgtatgtaaGGGGGATTATTTGCATTAAAAGTGCAATAAAATGTAGTAATCAAAATTGTTTTGTATCTATAGAGGGTTTTTGATGGAATCTCTTCATGTACTCAAATACTACTACACGCTtctatcagttttttttcaccAGCCCTTTTGTTTTCTAATTTATTAGTTTATGGCCAGACCAATGAATTGACAGTGAAATGTGTACCTGTCATGTTCGACTATGGTACACATCTCAGCTACCTGAAGATGCAGTACAACCGCCTTCATCACACACATGCACCTCAAGTCTGTTTGGACAAATGTTCTTCTCTATATCTGAAGATGACAAGTTGTTATGTGTTGAATTAGAAAGCACTTGAAATCCAGCATATAAAACATGGGATTTGTTTGTGTTCTTAATGCCAAATGGTTTTTAATGGCCTTTTTACCTCAGGACGTTGTGTTGTGCCTTTCTTTCTGTTAATATGGggctttgttatttgtttgtttttcctgcAGATTATAGTTTTACAGCTCAAGTGCttgatatttttaattgtttgagTCTTTTTCAGTCGATCTGTTTTGGAACACATTTTTGGATAAGCATGTTGCCAGTCTGCTTGTTAATACCCACACATTTGTTTTCACAAGATTTactgttttctcttctttctcatGGTTGTTCAGATTTTTGCTGTAATGTTCTAATTTGCTTGTGTTTTCTTATCGTTCACTCTCTTTCAAAAGCTGATTACATTTGGAAATACCTCATGCTGGAGACATCCAAGAGTATTTCTGAGCATTCTTGCTTTCAAGCTGATCAAATCCAATGTGTTCTTCATGTCTACataatttagattatatatttttattttagtatagtATCTCTCTTCACATAATGATTTACTGAGCCCACAAACATAGCCCTCCAGCATTAAAATGATAACAATTTGAGTCCAGCACTTTGCATGaacttgcactttttttttttctttcagaattTTCAAGTTTGggcttaaaatcattaattggATCTTTTAACTTGAAAATATACGGTTAGTTATATTCAGTTTCTTTTCTGTATCATGTCAGGAAATGCTCATTTGCACTCATCCTTTCAGAACTGTCCATAGAGAATGGTGCACCTTTTTTGGTTTGTACAGGCtttggttttggttttaattttaataatatcgATTCTTTAATAATATGCTCCGGTCTGTGGCCAGGGAGACACAAGACAGAGTAATGTTCTTCCGgtggaaataaaaggaatccagTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155472 lncRNA upstream 108336 32245266 ~ 32320645 (+) False LOC103025619
TU155477 lncRNA upstream 135040 32292488 ~ 32293941 (+) True G115106
TU155455 lncRNA upstream 261929 32156019 ~ 32167052 (+) True G115093
TU155370 lncRNA upstream 466096 31955617 ~ 31962885 (+) False LOC103031324
TU155375 lncRNA upstream 496849 31931758 ~ 31932132 (+) True G115030
TU155503 lncRNA downstream 129242 32577378 ~ 32609865 (+) True G115127
TU155517 lncRNA downstream 167827 32615963 ~ 32618034 (+) True G115137
TU155527 lncRNA downstream 248168 32696304 ~ 32696897 (+) True G115145
TU155719 lncRNA downstream 337746 32785882 ~ 32795500 (+) True G115278
TU155721 lncRNA downstream 343186 32791322 ~ 32795500 (+) False G115278
XM_015606904.2 mRNA upstream 72543 32324062 ~ 32356438 (+) True setd5
XM_015606905.2 mRNA upstream 72543 32324062 ~ 32356438 (+) False setd5
XM_015606907.2 mRNA upstream 72543 32324062 ~ 32356438 (+) False setd5
XM_015606908.2 mRNA upstream 72543 32324063 ~ 32356438 (+) False setd5
XM_022675693.1 mRNA upstream 72543 32324063 ~ 32356438 (+) False setd5
XM_007253317.3 mRNA downstream 2600 32450736 ~ 32589514 (+) True cpne9
XM_007253419.3 mRNA downstream 143724 32591860 ~ 32600835 (+) True zxdc
XM_007253315.3 mRNA downstream 183123 32631259 ~ 32644784 (+) True LOC103022786
XM_007253314.3 mRNA downstream 262370 32710506 ~ 32728257 (+) True LOC103022276
XM_007253312.2 mRNA downstream 281203 32729339 ~ 32746968 (+) False LOC103021538
TU155443 other upstream 294113 32129305 ~ 32134868 (+) False LOC103027407
TU155369 other upstream 534630 31893285 ~ 31894351 (+) True G115024
TU155153 other upstream 1548428 30850309 ~ 30880553 (+) True G114841
TU154976 other upstream 2299085 30126335 ~ 30129896 (+) True G114698
TU154011 other upstream 4984035 27391029 ~ 27444946 (+) False LOC103037845
XR_002650704.1 other downstream 156821 32604957 ~ 32605732 (+) True LOC111193763
TU155511 other downstream 162313 32610449 ~ 32611203 (+) True G115133
TU156039 other downstream 1647781 34095917 ~ 34096865 (+) True G115510
XR_001518742.2 other downstream 1882862 34330998 ~ 34338917 (+) False rbm38
TU156151 other downstream 1932168 34380304 ~ 34391959 (+) False LOC103038162

Expression Profile