RNA id: XM_007253350.3


Basic Information

Item Value
RNA id XM_007253350.3
length 1675
RNA type mRNA
GC content 0.49
exon number 5
gene id LOC103034279
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 31417153 ~ 31569856 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tcctctttcctcCGCTTCTGTGCCGTCTGTCCTCGCGCTCCCCCCGCCTACAGCTCCCGTGCAGGACTTGAGCCGCGCGCGCTCTCCCGGTGATGGATAAGGGAATTCTGTGGGAGAGCTGCATGTGCGCCCTTCCAGAACCTCAACCGGGACTGAGGAGCTCCGTCTAACTCCCCGCGtgctctcgccctctctctttctagctctcgctctctgtctcgcCGCGGGAAGTTTTTTTTCGGAGGTGGGAAGTTTTGGCGAGGCGCGAGCGCAGCGCACTTTGCGCCCCATAGAAGAACTAGAATTTGGGGAAGAAGGGGGGGAAAGTGATTTGGACAGAAAGAGACGCTTTTCTCCGCGAGTGATGCTTGTGATGCTTTTCTCGGGAGCGTCGTCGAGCGGAGGTGCTGATGCTGAGCCTCTGACGCGGCCGGAGCTCGTGCCTCTCTCCATGGAGCGCAAATGAGAGGCTTATTATCTACGCGGGTGTGCTAACAGCTCAGCGACAGgatgcGGGAGAGGGAGTTGTGGAGCGTGGGCAGGAGAGTGCTACTGCTTGGCGTCTGTCTGCTGTCTCTGTGGGGGCAGCTGAGCCTGGCCTCCTCACACCGTAGCCACATTGTGCACGTCAAAGCAGGAACCTGTGAGGTCATAGCAGCACACCGCTGCTGTAACAAGAACAAAATCGAAGAGCGTTCCCAAACTGTCAAGTGCTCCTGCTTCCCCGGGCAAGTCGCCGGCACCACCCGAGCGGCCCCCTCCTGCGTGGATGCATCTATTGTAGCACAGAAGTGGTGGTGCCAGATGCAGCCGTGCATGGAGGGAGAAGAATGTAAGGTGTTGCCGGATCTCAAGGGGTGGAGCTGCAGCACTGGGAACAAAGTGAAGACGACCAggGTCACACGATAGTCTGGGATGGGGATCTTCAGCACTCGTCGtcttttgctctgattacttAGATTGGACTAAGACTGCTCAAGGACAGTAGAAATCATGTATTTGGACTTCAGTGGAATACTGGCTTAAATAGAAATGGAAACGCTGTAAAAGAACCCTTTTGCCTTCCATGGTCAGCCTTCCAAACTTCCATCTATGTTTTATAGCTATTGGACAAGAACATCCatcatgtaaaatatgtatttgacAAGATATAGACATTAACTACGAACCAAGACATGGATTAATCAGAGGATACAGTGTGCGACACACTGCAGAACTATGGATTACTCTTTTTtcccatgtttttttctctctttttttgaaACCACGGTGGACTTAAGAAGTTCACTGACCGCGCTTGAAGTGTACGTGTTCCCGAGGCACTTGTGTTCAGTTCTCCACCCTTTGATGCcaatttctttcttcttcttgttttcttttttttttggaatatttttGATCTTTGTGAGGTGTTTAATTTTAAGGATGATTTCAGAGCTTGTGTTTTGAAATGAACTTGTgccattgaaagaaaaaaaaaatctatatattaaGATAAAAGTTTAAACTATGGTTATAGTGGTTGGAATCTGGCAGAGGTTCACTGCGCCAGTGAAAATGAATATAGCTTTGCAACCTCAGAtatgctgtttgttttttcaaatcTTGGTGACCGCTATTGAGTAAAAGTGTAAGTATTATCTCAAATAAAAGTATCTCGATGGGAAACCTTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155289 lncRNA upstream 10590 31406296 ~ 31406563 (+) True G114955
TU155237 lncRNA upstream 87677 31314456 ~ 31329476 (+) True G114911
TU155235 lncRNA upstream 102805 31313735 ~ 31314348 (+) True G114910
TU155179 lncRNA upstream 302614 31110333 ~ 31114539 (+) True G114867
TU155180 lncRNA upstream 302614 31110333 ~ 31114539 (+) False G114867
TU155314 lncRNA downstream 27843 31597699 ~ 31597930 (+) True G114978
TU155315 lncRNA downstream 47917 31617773 ~ 31618350 (+) True G114979
TU155330 lncRNA downstream 109050 31678906 ~ 31679326 (+) True G114994
TU155332 lncRNA downstream 124589 31694445 ~ 31694654 (+) True G114996
TU155372 lncRNA downstream 347114 31916970 ~ 31917304 (+) True G115027
XM_007253352.3 mRNA upstream 67239 31332545 ~ 31349914 (+) True LOC103034927
XM_015606902.2 mRNA upstream 132314 31270025 ~ 31284839 (+) True LOC103029625
XM_007253356.3 mRNA upstream 154113 31234183 ~ 31263040 (+) True LOC103036086
XM_007253357.2 mRNA upstream 185322 31185467 ~ 31231831 (+) True LOC103036390
XM_022675678.1 mRNA upstream 185322 31197604 ~ 31231831 (+) False LOC103036390
XM_022675680.1 mRNA downstream 208221 31778077 ~ 31787521 (+) True LOC103033959
XM_007253346.3 mRNA downstream 227816 31797672 ~ 31810212 (+) True LOC103032899
XM_022675681.1 mRNA downstream 246730 31816586 ~ 31825662 (+) True sycp1
XM_022675685.1 mRNA downstream 260407 31830263 ~ 31843917 (+) True LOC103029304
XM_015606917.2 mRNA downstream 261254 31831110 ~ 31843917 (+) False LOC103029304
TU155153 other upstream 536600 30850309 ~ 30880553 (+) True G114841
TU154976 other upstream 1287257 30126335 ~ 30129896 (+) True G114698
TU154011 other upstream 3972207 27391029 ~ 27444946 (+) False LOC103037845
TU153992 other upstream 4064709 27347449 ~ 27352444 (+) True G113979
TU155369 other downstream 323429 31893285 ~ 31894351 (+) True G115024
TU155443 other downstream 559449 32129305 ~ 32134868 (+) False LOC103027407
XR_002650704.1 other downstream 1035101 32604957 ~ 32605732 (+) True LOC111193763
TU155511 other downstream 1040593 32610449 ~ 32611203 (+) True G115133
TU156039 other downstream 2526061 34095917 ~ 34096865 (+) True G115510

Expression Profile