RNA id: XM_007253419.3


Basic Information

Item Value
RNA id XM_007253419.3
length 4747
RNA type mRNA
GC content 0.54
exon number 10
gene id zxdc
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 32591860 ~ 32600835 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTGGCTCCGTTGGGTCTTATTACCCATTAGAGTAGGGCGGGACTTTATGTGTCGCTGCTACAGGGACACCAAGATGGAAATCCAGGGGCTTACTGATGCCCAAAACACTCACTACCAACATGGCGCCCCGCGTAAGTCAGGATCACCTCCGCTGGGAACGGCGACGGGAAGTTGCGTTTCTAGCTTCGGTTCGAAAGAGAATGGTAGCGGGGGCCGCCCGGCCCAGCGCGGGCTTCAGAGAGACAGCGACAGCAACAACAACAGGCGGCCGGGCTGCTCTCCGCCTTGTACGCTGGTGCAAAATGGCAGCGTCGGCCTTCCGCGCCTGTGTCTCCAGCAGGACGGGCGCGACGACCCGCCGTCGCCCCGAGCGGCTGGAGTGGTCGAGCTACGGGAGTACGGGGATTTGGAGCTCCCTGCTGACTTCGTGAAGGTGGAGCTGAAGTACAGCGGAGAGGAGAGCGAGGAGGACGGCGTGCTGCAAATGGCGCTGCCTCTTTTCGAGGGGGAGGACGGATACGGAGAGCAGAGACCGCAGGAGGAACAACTACAGCTGCAGCAGCGGCGGGAGGACACGGGCTGTAGGAACGGCAGCTTAAGCAAATTTAACGTTAACTCTAACGCTATCGTCTCTTTATCGTCCTCCTTATCCACGTCTACGTCGTTCACAGCCACTGCctccagtagcagcagcagtaacaaCAACAGtagcggcggcagcagcagctctgctaGCGCCACCCCCAGCTCTAGCGCTAGCACGGCGGGCTCGTCTGGTGGGAAAGGCCGTGAGGAATTTTACGTCGTGTTTAACATCGTTCCGGACGAAAACGGCCTCGATAAAGAGCGACGGACGCGCCTGTGTAAAGTAAACGGAAGAAAAGCCCTGCTAGAGCCCTCTAAATCAGCGTACGGGCAGCACGGTTTATTCATGGAAGCGGACGAAAAGGCCGTCACCCCCCCGGATCTAGCGTTAGCAGCCGGGGCgagcggctctgctgcagcggGGGGTCAGCGCGGGCTGTTCGAGGCCGAAAGCAAAGACATGGCGCTGTCAGCCGGTGGTTCTGAAGAGGAATGCAACGTTAACATCAGCGACAAACTGCCCGATGTGGTCATGATGAGCTGTGCCACTAATTTAGGTTCAGGTGATCAGGGCGAACTGAGCGAGGGGGAGTGTAAGAACCCCCCGGCCCCAGAGCCAGGGAGTGCTGGAGTGGCTGGGAGCAGTAACGCGAAAAGCCCGCAGTACGTGGCGGACTATGCCCGGCTCACACCCGGTGAGAACGGCGACGCACACGACTCTTTCTCGGGCACGATCACGATCAACAACCAGAGCATCATCCTGACCATCGAGAACGGCGTGTTGACCCTGGCCGCCCCTCCGGAGGGCTACGCGTACAAGGAGGACGGCATGCTGAGCCTGAAGGAGCACCTTGGGATGAAGGAGCACGAAGACTTCGTTCTGCTGAACTACGACGGCGGAACCAAGTCTATAGGGAAGATCAGCAGCGCTGCCGGCGCTGATCGGGAGGAGCGCAGCGCCGGGCAGGCTAACAGCGACTCCGAGATGACCCTGGATGACCAGTGCGTCTTTCCAGAGCTGCCCGGGTCGGTACTGGACTGCTGCCCTTCGGTCAAACAGGAGGAAGCCGGTTTGTGTGATGTGGAGGAAGCCAGCGCCTTGGGTCACTGTCCTAAAGATTCCACTGTCGGGCTACATGCTGGATGTGACGATGAGATGCAGTCTATGGGCCTCGGGGGTCCAGGTTTGGCCAAGAAAGGAGCCTTAGTAACATACCGCTGTCCTCACTCTGGATGTTCCGATGTGTTCGGCAGCCGGCAGAAGCTTAAAATGCATCTCGTTTTCCATACAGAAGACCAGCGGCCCTTTAAATGCACAGTGGAGGGCTGTGGCTGGTCCTTCACCACCTCATACAAACTAAAGCGCCACCTGCAGTCCCACGACAAGGTTCGGCCGTACAAGTGCGAGTGGGAGAACTGTGGCCGCCGCTTTACCACTGTCTACAATCTTAAAGCCCATGTTAAGGCGCACGATCAGGAAGACGCCTTTGTGTGTGATATTTGCAGCGAGAGGTTCCGCAGTGCCACACGGCTCGCCAATCATCAGAGGACACACTTCGAGCCTGAGCGGCCACACAAGTGTGAATTCCCAGGATGTGAGAAGGCCTTCATCACCTTCAGTGCCCTGTTCTCCCACAACAGAACTCATTTCAGGGAAACTGGTCAGTTCACATGTACCTATCCAGGCTGTGACAAGCGTTATGACAAGGCCTGCCGCCTTAAAATCCACCTCCGTAGTCACACGGGTGAGAGGCCGTTTGTCTGTGACTGGGAGTCTTGTGGTTGGACTTTCACTAGCATGTCAAAGCTGTTGCGACACAAAAGGAAGCATGATGACGATCGACGGTTTATGTGCCCGGAGGAGGGCTGTGGAAAGTCCTTCACACGTGCAGAGCACCTGAAGGGCCACAGTATCACCCACCTGGGCACAAAGCCTTTTGAGTGCAGAGTAGAAGGTTGTAATGCAAAGTTCTCAGCACGTAGCAGCCTTTACATTCACTCCAAGAAACACCGGCAGGATGGGGTGTGTCTGAGGAGCAGATGTCCTGTGGCTGGATGCACCAAGCTCTTCTCATCCCGCAGCAGCCTAAAAAGCCACATGCTTAAACATCACAACCTTAGTGCAGATGTGTTGAGTCAGCTGGAGAGTACGGCCACTCTGACGCCTAGCTGTGAGCTCACCAGCGCTGCTCAGACTGCTACCACCCCAGGCTCTGTGGGAGCAGAGCTCAGCAGTCTAGACCTCTCCTCACTTCTCTCTACTGTGCCCTCAGGGGCCCCCGCAGCATCTGGTGGCCCCTCAGCCCCCTCAGGCCCAGCCTTTACCATGGACATGTCTCTAGTTGGTGCTGGTATCCTGACCATAGATCCCACTTCAGTCAGCTCCTCTCTTGGAGGGGCAAAAACCGTGGACCCTCTTATCTTGGCAGCGGGGGCAGACATGGGTGCACATGTGCTGGATGCTGGATTAGGACCCGGAGCAGGTGGAGGAGTCCTGCAGCAGGCCACTCTGCATTTGGACGATGTGCAGACTGTGAACCCAGAGGCAATTGGAGCGTTAACTGCCCTGGCTATCCAGAGCACCTCATCAGCAGAACAGCTGCAAGCCCTGAGCTCCTCCAGCGCTTTAACAGCAGAGTCCCCTTCTTCCTCCCTGACCCCATCACTTACCCCCTCGCTTTCTTCCTCACTGTCTTCGTCTCTAGCACCCTCACTCGCCTCTTCTCTTATCCCATCTCTCGCATCCTCCACTGCTCTGGCAGGACCCCCAGTTCCAGAGCTGCTGTCTCCCCAGCCAAAAGCAGATATGGGGGGCAGTGAGGCGGCCGTGGGGCCTTTAATTAGTGGGGTGGAGGTTCTGTCTCAGCCGGAGAACAGCAAGGGAATGAGCCAGTTTGTGTTTCCCAGCCACAGTGCAGCTTATGGTGGACAGAAAGAGTCGGAGCTGCCTTCGGTGACCACTTGTTCCTTTCTGGAGAGCAGTGGTTCTGCACGCACAGACTACAGAGCCATTCAGCTGGCAAAAAGAAGGAAACAGAAAGGCCCTGCTGGAAACGCAAGCACTTCAGGGGCATCTCAGAGGAAGGCTAAGGGGGCCAAAGGTTCCAGTGCAGCAGGGGCGTTGGCTTCCACAAGTGGCCGTTTTGGAGAAGGAGCTGCAGCAACCACGGGGGGCCTCACTATTCGAGACCCGGTCACAGGAGCCCAGTATGTGCAGATTCAGCTCCTGCAGGATGACCCAGCCACTGACGGAGACTTGGCTTTTCAGCTCAGCTCACAGACCTCGAGTTCTCATTCTCAGTTAACAGTCGATCTGCCCGTCAACATCTTACAGGAGCCTTCTGCCATGACTGAGGATGATAACGGATCAGACAACTCACAGTTCACTGGCAGCACAATCAATCTACAGGACTTGGAGTGATTGTTTAATGGAGATGCATCATGGGCCTCTGTTGGActttgtggctttttttttcctttgagtTTGAGCCTCTCAGTCCACCCACTTCAATGGAATAACGAAGCaccatttaacacattttagccAAGTTTCCTTTATTTTAAGACAGTTTGTTTCTTTTACTCCTGAACAGTAATTTAggcatgtgtgtatttgtgatggAGAGACCCTGTTAGGAGACTGCTAAGCAAAGATTTTAGTGTTTACCACCCTCCAGTTATTGAAGCACCATCTACTTCTAAGAGTACTGTGAGGGTCCAGCATTAACTGTTTGTGTTGATGGCATAAGTATTTATTAGTACCGCTCTGAGTGCTTCTCTCAATGTGCTTCACAGAggaatagttaaaaaaaatgtttcagctTTTGTTAAAATTGCTTGTATTTCAGGGCAAGGCTGTGTCTCACTCTAGGTAAATATTCTGAAATAAGTCTGAAAATTGTGAAATAATGTAAAGGTACTTTGGTTGCAAAGGTTTATTGTTTGTGCAGTAAGGTACCTGCCAGAAAAATGGCTGTAAGAAATGCTGTTTCGCAGTCTTTCTATTTGCCCTCCAGTTTTGCCAAGGCAACAGAGTCTACACCGAATAactttgtgcattttttttatgtaaaacaaagATACAATTGTTTGTCTTATGTTTgtaaatgatattaaaataaaaaatggtgctctacttttttttataaaaagtaaaactga

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155472 lncRNA upstream 271215 32245266 ~ 32320645 (+) False LOC103025619
TU155477 lncRNA upstream 297919 32292488 ~ 32293941 (+) True G115106
TU155455 lncRNA upstream 424808 32156019 ~ 32167052 (+) True G115093
TU155370 lncRNA upstream 628975 31955617 ~ 31962885 (+) False LOC103031324
TU155375 lncRNA upstream 659728 31931758 ~ 31932132 (+) True G115030
TU155517 lncRNA downstream 15128 32615963 ~ 32618034 (+) True G115137
TU155527 lncRNA downstream 95469 32696304 ~ 32696897 (+) True G115145
TU155719 lncRNA downstream 185047 32785882 ~ 32795500 (+) True G115278
TU155721 lncRNA downstream 190487 32791322 ~ 32795500 (+) False G115278
TU155733 lncRNA downstream 200064 32800899 ~ 32801184 (+) True G115288
XM_007253317.3 mRNA upstream 2346 32450736 ~ 32589514 (+) True cpne9
XM_007253319.3 mRNA upstream 143724 32428981 ~ 32448136 (+) False mtmr14
XM_007253318.3 mRNA upstream 143724 32428982 ~ 32448136 (+) True mtmr14
XM_015606907.2 mRNA upstream 235422 32324062 ~ 32356438 (+) False setd5
XM_007253315.3 mRNA downstream 30424 32631259 ~ 32644784 (+) True LOC103022786
XM_007253314.3 mRNA downstream 109671 32710506 ~ 32728257 (+) True LOC103022276
XM_007253312.2 mRNA downstream 128504 32729339 ~ 32746968 (+) False LOC103021538
XM_007253311.3 mRNA downstream 132669 32733504 ~ 32746968 (+) True LOC103021538
XM_007253301.3 mRNA downstream 797173 33398008 ~ 33407467 (+) True LOC103045271
TU155443 other upstream 456992 32129305 ~ 32134868 (+) False LOC103027407
TU155369 other upstream 697509 31893285 ~ 31894351 (+) True G115024
TU155153 other upstream 1711307 30850309 ~ 30880553 (+) True G114841
TU154976 other upstream 2461964 30126335 ~ 30129896 (+) True G114698
TU154011 other upstream 5146914 27391029 ~ 27444946 (+) False LOC103037845
XR_002650704.1 other downstream 4122 32604957 ~ 32605732 (+) True LOC111193763
TU155511 other downstream 9614 32610449 ~ 32611203 (+) True G115133
TU156039 other downstream 1495082 34095917 ~ 34096865 (+) True G115510
XR_001518742.2 other downstream 1730163 34330998 ~ 34338917 (+) False rbm38
TU156151 other downstream 1779469 34380304 ~ 34391959 (+) False LOC103038162

Expression Profile