RNA id: XM_007254221.3


Basic Information

Item Value
RNA id XM_007254221.3
length 3187
RNA type mRNA
GC content 0.48
exon number 12
gene id b4galnt1
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 36923290 ~ 36940623 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGGCGGAGGGGATGGCTATTAGCAGCGCTGCAGAGGCGCAGTAACTCCGTTGGAATTAGCCTCCGCCAGAGGGGTAGCTTCACCGTCTACATCCATCTCTCCTTCCATCCCGGTTTTATCAGTGGTGGATGTCATGCCACTGGATTTTCTGCCCCCATCAGCAGCGGGCAGTGATTCAATGCAGGGAATTCCGAGCTAATGATTCAGAGGACATTGTTGAGGATTCCAGCGCTGGAAAGATGGTGATAGTCCTCCACCACCGCCACTCACTCCTGTCAACCATGTCTACATTCCACCGATCATCACTGCCATGGATTTTTGGGAGCAACAATGGCATCCTACACCTCGCATACTGACTGGATAGAtTTGTAGGATGCGTTCTCTGCGTAAGACGGTGTTGTTAGCACTGGTAGCGTCTGTGGTCCTGTTTCTGGCAGTGCTACACACATGGCCCACTCGGGCCTACAGCACCGTGGATGTCCGTCAGAGACCCGGACCTGGAGTGGAACGGCTGTTGGAGGAGAGACTCCCAGAGCCGGACCCCAGTGCTAGCACCGTCCCGTACCGTGTGAGGGAGAGTGTCGCCGGGCTTCTGGCACgtaatggctgtgtgtgtgagggtgagagAGGAGGTGTGAACTTGCCGTTTGCTCAACTGCTGTTCCCACGAGTGTCTGCTCACCCCCTGCACACAGCCTTCCAGCCCTCCCAGCTGGAGGAGATGAAGAGACGGCGAGCCAAAGAGTATCAGGGCTTCCAAATGAGGTCACAAACCCCTGCTGATTTTCTGATTGTAGCTGAAGCTAATAGCCCACTGCAATACCCAACACAGGGTGTGGAGGTGCGGCCACTCAAGACGATCCTTATACCAGGCTTGGCCTTAAAAGACCTGCCCAGAGACGTTTACACTTTGAATTTCTCGGCATCTCTGGGCACGTTTAATGTGGCAGCAGAAGTGGACGGGGTAAAGATCAGAGGTGATGGAGAGATGCACATGAGCCTAAGCAGCTGCCTCTTGCCCAACCTGAACCGCCAGCTTCAGTTCATCACTTATACGAACACACTGTTCCACCCcagcactgcagacacagTGCAATTAGAGACCGAAGGACATCAAGCTCTTTTCACCATCAAAATCCGTCATGGAGTGACACCTAAGCTCTACAACACCGGCTCAGACGGAGATAAAGAATACAATATCAGCGCTCTGGTCACCATAGCCACTAAAACATTTCTGCGGTATAACAAGCTCCAGGACCTGATTGACAGCATACGAAGATACTACCCAACAGTCACCATAGTAATAGCGGATGACAGCGAAAATCCGAAAATGGTGTCCGGCCCAAATATAGAGCACTACATCATGCCGTTTGGAAAGGGTTGGTTTGCAGGCCGTAATCTAGCTGTGTCGCAGGTCACCACTAAGTACGTTCTATGGGTGGATGATGACTTTATCTTCACTGCCAACACCAAACTAGAGAAACTTGTGGATGTTCTGGAGAAGACCACACTTGACTTGgtgggAGGTGCGGTGCGTGAGGCTACAGGCTACACTGCCACCTACAGGCAGACTATCTCTATAGAGGCAGGAGAAGAGGATGGGGACTGTCTGCACATGAGACGTGGGTTCCATCACGTCATCCAAGGCTTCCCCAACTGCGTGGTCACTGATGGAGTCATTAACTTCTTTCTGGCCCGGACAGATAAGGTGCAGCAGGTGGGCTTTGACCCACGGTTAGCCCGCGTCGCCCACCTGGAGTTTTTCATCGATGGACTGGGTTCTCTTCACGTCGGTTCGTGTGATGATGTCATTGTGAACCATGCCACCAAGATCAAGCTTCCGTGGGGTCAGTCGGAGAGCGACAAAACCTACGCCAAGTTCCGCTACCCCCCGGCATCTTCTGACGCTACACATACCAAAAATGGCCTCCTGTACTTCAAGAACCGCTTCCAGTGTCTCACACACAACTGAACACACTCTTCCACTGCGCCCTTGTTCCCTCTTTTTGTCTTCCTTTCTGAAAAGACCTCTTTTTCTGGAGTAGCTAAAGGGGATCTTTAAGGGGACCCgggaatgtgtgtatgtgtgtgtgtgtgtgtgtgtatgtgaatgcatgtgtgtgtgaatgcctatgtgtgtgtgtgtgtgtgtatgtgtgtctacAGTCTGCTAAGTTTTCCCTTTCCTTCATTTTAATGTGGGAAGGTTCAAAATAGTCCCCTCCTTTTGGAGGGCCCCAAAGTTGATTTTATTTTGACTGACAGAGGATAGATAGCAGctgattgttgtttttttgttgttgttgttgcttttttaaTAACTGATGGATGAAGATCATATTTTTTATGTCCTGATCTGCTCAGTTTGGATTTTTCAAGAGAAGTCATTCCCTGTCTGAAGCAGCTCAGTCACTTTGATTTTTCTTCTGCCAGTCACAGATGattctgtcctgtgtttttaagGGGAAATTAGGGTTTGTCCCTCATGAGAGTTTGACGTGTGGACAATGGATGCTTTTTTAAGTGCAGAAAGGGAGATATGGGCATTGACGGACCGCCACAAACGAACCACTGACTCAGAATGAGCTCCTTTtaagagtgtagagtgtgtatgagtatgtgtgcttctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcaggCATTTATGTTTGAGGGCCTTCTCTCTGTATGTTTGCACTAATTCAAATGGACTAATTTGAGAGATTGGACCCTGAGCTTGTCTGGAGAGAAAAAACCCATATAAACCAGCTTAGACTGCAGATCCCACccattctttttctctctaccactctctcaatatttctttctttctttctctctctctctctctctcttcaaacACTCTTAGATGCAGATGGAGGATGTGTTAAAGTGAACTATCTCAACTTTGATGTTTTAAATCTACATTGCCAAAAGCCTCAGTGCTGTCCTCGTTCAGTTCCTTGGttcctttttatttgtttttatttatttatttatttatttatttgtctgtctCAAATTGACGGGCATCTTATTCAGAATGCAGCCCATTTCTCATATTTTTCTTCTGAACTAGGCTGTAGTCTCTTCTCTTGTGTAACGGTGTGATACCCTGCTTGTCCTGGGGTTTAATTAAACTGGGTCTAGTCCGGGGCTGTTTTTTA

Function

GO:

id name namespace
GO:0030259 lipid glycosylation biological_process
GO:0030173 integral component of Golgi membrane cellular_component
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG:

id description
K00725 B4GALNT1, GALGT; (N-Acetylneuraminyl)-galactosylglucosylceramide N-acetylgalactosaminyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157273 lncRNA downstream 67328 36854860 ~ 36855962 (-) True G116426
TU157282 lncRNA downstream 102476 36799842 ~ 36820814 (-) True G116434
TU157248 lncRNA downstream 195051 36727991 ~ 36728239 (-) True G116407
TU157235 lncRNA downstream 201397 36714942 ~ 36721893 (-) False G116398
TU157328 lncRNA upstream 13167 36953790 ~ 37010174 (-) True G116475
TU157343 lncRNA upstream 23909 36964532 ~ 36971714 (-) True G116483
TU157353 lncRNA upstream 56271 36996894 ~ 36997753 (-) True G116492
TU157356 lncRNA upstream 63673 37004296 ~ 37005934 (-) True G116495
TU157333 lncRNA upstream 81552 37022175 ~ 37031361 (-) True LOC103023810
XM_015607106.2 mRNA downstream 21142 36895859 ~ 36902148 (-) True LOC103040574
XM_007254225.2 mRNA downstream 31038 36882810 ~ 36892252 (-) True LOC103041181
XM_007254227.2 mRNA downstream 84247 36834070 ~ 36839043 (-) True LOC103041794
XM_007254228.3 mRNA downstream 92849 36825285 ~ 36830441 (-) True LOC103042096
XM_022675780.1 mRNA downstream 181244 36737746 ~ 36742046 (-) True LOC107197751
XM_007249132.3 mRNA upstream 71817 37012440 ~ 37016661 (-) True gpr84
XM_007249141.3 mRNA upstream 82768 37023391 ~ 37031363 (-) False LOC103023810
XM_007249131.3 mRNA upstream 91269 37031892 ~ 37037375 (-) True LOC103047373
XM_007249121.3 mRNA upstream 219285 37159908 ~ 37166924 (-) True LOC103044934
XM_007249117.3 mRNA upstream 227558 37168181 ~ 37179554 (-) True LOC103043928
TU156955 other downstream 861361 36056563 ~ 36061929 (-) True LOC103028059
TU156811 other downstream 964861 35955109 ~ 35958429 (-) False LOC103031109
XR_002650714.1 other downstream 1042999 35869803 ~ 35880291 (-) False LOC103034399
XR_002650713.1 other downstream 1042999 35869803 ~ 35880291 (-) False LOC103034399
TU156800 other downstream 1107968 35813621 ~ 35815322 (-) True G116068
XR_001518677.2 other upstream 82768 37023391 ~ 37031360 (-) False LOC103023810
TU157486 other upstream 100738 37041361 ~ 37045788 (-) True G116581
trnaq-uug_2 other upstream 152376 37092999 ~ 37093070 (-) True trnaq-uug_2
TU157786 other upstream 1440647 38381270 ~ 38384598 (-) True G116805
XR_002650725.1 other upstream 3419778 40360401 ~ 40363960 (-) False LOC103040080

Expression Profile