RNA id: XM_015607126.2


Basic Information

Item Value
RNA id XM_015607126.2
length 4251
RNA type mRNA
GC content 0.40
exon number 16
gene id LOC103047301
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 36576618 ~ 36596744 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGACCCAGAATTATTTCCCACCTGCAAAGTGAAGGATGTTGAAACTTGCATTCAGGGCACATTAAagttcacttcacttcactatACTTATTTTAAAAGCTGGGAGCATTCTAAAACCATTGTACATTGTATTGTCAGTGCAGCAGTATAAACACAATCTCGATCTCTACAAAACCCTCTATAGAAGAGAACCAATGCAACAGTTTCTTATTGATGCTTGTTAAtgtgagtaaatatatatttttttcaaattatttttttaactaccAACTTTTTCCATCATATAATtatttaccatgaaatattcaCACGGTATAAATGTAGGTTTGGGTATGATAGTGAGCTGCGGCAAGCTAGTTCTTCTAGCTAATCTGAGTGAAGCAGCTGTGGTTGTGGGAACTGCTCGATCACACGCCTGCTGTAGGAACTCGCAAGGCAGAAGTGAGAGTGTAATAAGCAGAAAGCCTTCACAGCAACATCATGCAGGTCATGACATTTGGTCTAGTGGTGGTGGTTCTTCTGCAGTTTGTGGTGCAGCCATGTGTAGCAGAACTAGTTTGCCAACCGAAGGGTTCATGTGCTGAATGTCTAAGGAGTCCAGGATGTGCCTGGTGTAAACAGCAGGGTTTCCTGAAGCCAGGAGAGTCAAATGAGCGCAGATGTGATTTGTTAAATTCACTGAAGACCAGGGAGTGTGAGGAAATCATTGGTCAGCTTGGAGAAACGTCCAGATTGAAAGACAGCGACCTCAACAGCGACCCCGACAATGTTGTCCAACTCAAACCACAGAGCCTTCACGTTAAGCTTCAACTTGGTGTGCCACAAGAATTTAAGGTAGAATTCAGGAGGGCTGAAGGTTACCCCATAGACCTGTACTATCTGATGGATCTGAGCTACTCAATGAAGGATGATCTAGAGAAGATTAAGAACCTGGGtcagaatattttaaacaagCTGCAGGAGGTAACCAAGTCTGTCCGAATTGGTTTTGGCTCATTCGTGGACAAGGAGAAGTTGCCGTATGTTAGCCAGGTAAAGTCCAGGCGTGAGAAACCCTGCCCCATCCGCATGGACAACTGCCAGCCTGCCTTCACCTTCCAGAATGTTCTCCCACTGACATACTCAGCCAGAGAGTTCAAGAATGAAGTCAGTAAGCAGAACATCTCTGGTAACCTGGACTCACCTGAAGCTGGACTGGATGCCATCATGCAGGCTGCTGTGTGTCAGAAAGAGATCAATTGGAAAAATGTGACACGGATCCTGGTCTACACATCTGATGACACCTTCCACATGGCCGGAGATGGACGGCTTTCTGGCATCTTTAGGCCACATGATGGGCAGTGTCACCTTAGCCGTGACGGTTTTTATGATGGCAAAACTTTTgattATCCATCGATAGGCCATCTCTCTAGGGTTCTTCAGGCTAACAACATTCAGCTGATATTTGCAGTGACTGAGAAGAGCGTTCCAGCCTATAAGGCCCTGAGTTCATTGATTCCTCAGTCGGTGGTTGGTGTGCTGGAGGATGACTCCAGTAATGTGGTCCAGCTCATCTCTGAAGCGTATGGGAACCTGTCATCCACTCTGCTGCTGGAGCAGGACCAAACCCCTACAGGTCTACAAGTGTCCTACAAGTCCCACTGCAAAACCGGAGAACCCAGTGAGTGGCAGAGCAGGGGAGAGTGTACCGGCATCAAGGTCAACGAAAAGGTGGAGTTTACAATTCGCCTAAATGCATCAGAATGTCTGAATGGGCCTCAGGAAGTGCTCATTCGAATGCAGGGCATCAGTGAGGtcctgaaagtgaaagtagagACACTGTGTGATTGCAATTGTGACACAGAGGAGAATTCAACGCACTGTAATGGAAAAGGAACACACATCTGTGGAGTCTGCAGCTGTAATGAAGGATTCCTGGGTCAGCACTGTGAGTGTGAACATAATCTTGATATGACATCCACTGAAGTAATGCTGAAGAACTGCCGCCAGAACAATGTCTCGCAGGTGTGCAGTGGGCATGGCTACTGTGAATGTGGCAAGTGTACTTGCCGTGGGCCTTTTGATGGCAGTTTCTGCGAGTGTGATTCTACCAGCTGTGAACGCCATGACGGCAAAATCTGCAACGAGAAAGGTAAATGTATCTGTGGTACCTGTGATTGCAGTAATTCAGGTTACGAGGGCCGTGCATGTGGCTGCTCAACAGACAAAAAAATGTGTCAGAATGAGCACGGACTATTGTGTAGCGGCCATGGGAAGTGTAGGTGTAACCAGTGTGAGTGTAATCCTGGTTTTGTGGGACAGCATTGCTCCGATCTTGTCTCTCCATGCCAAACATATGTaaaatgtgtggATTGTACAGTCCAGAGTGAGCTTTATAGTCGCTCGTCTAACTGCTCTGTGGCTTGTGAGGCAGTTCAGATGGTCCACCTGAAGGACAATCATGAGCTGCCATGTGTGCATAAGGATGTCATTTATGACGTGACGCTGAACAATGACGGCACAGTGAAGATCCAGTACGCTAATCTGCCAGGCACGGTTGATAAAACCAAGATAATCATTGGCACGTCAGTATCAGCCATTGTTTTTATTGGCATTGCAATTATCATCATCTACAAAGTCCTGCTGGAGCTTTATGATCTGAGGGAATACCGCAGCTTCATCAAGGCTCAGCAGCAAACTGATTGGAAAGAGACTAATAATCCACTGTTCCAAGGAGCCACAACAACAGTGCTCAACCCTCTGCATTCACAGGACAGCTAAAGCATCACGACTGTAAGGAAGGAACTGGAGAGTGTGTCAATGTGATTAATATGTCTGTGTATTCTATTCTGATTGTAtcatttttgcagtgttttgtaATACACCAATACTTTATACAGGCTTTACAGAGTAACATATAGGCTGCATATTTCCATAACCAGTAACATAAATTATTATACATACAGATGTATTTGTCATTCTGATTGAAAGCGCATTTAAGATGTACATGCAAGTTTAAtgttaatcagtttttttatttttacatgtttttgcaGCATGCAAAATGATAAGCAGCTTTAAGTGTGAGCTCTAAAATCATTTcatattctatatattatttttattattatcgaGGCACTGAATGATGTTACCTGTAATGTGAGAGTAAGTCACAGAGGTACAAGTCTCGAGTTTGGATGTTGTGCTTGTTGTGTCACTGATTTTTCCTCaatctatattttttaatagcCCCTTTCATAATTAGTCATAATTATATTGCACTCTGCTGGTCTGCCGTGTCCTGGTAGGTTGCCAGGTTCACACATTGGAACAGAAATCAACCAATAATGcttcaaaaacaaaatgaagttcttaatgtttaaatcaggcttttatcagttttactcaaacaaatcaCAAGTTCAGATTGCTTGTGCCTAATCATGTGACTGGGTTTCCCCACCTCTTGTGACTGAAACGTATATCGCAgctatccaatgaaaaacaagtatctttatttttgttgatttttttagttttctacatcATTTGAACAAACACACTATTCTTTACACTTGATGGATTAATAGAAATGATccaaacttaaatttaaataatcccCTTTAACACTGACTTATATTAAAGGTTAAGTGACTGTGTTTCTAAGTTGCTGTGTATATGTCATTTATATATACCTATTTTGCTGATTTTTAATGGactatttaaagtttatttttttgcacattgGAGATCACaatgaagtgcatgtaaattttgtttattaaaatatatagaacCCCAAAGGAATATTCCCTGTTTATAGAATGTATTTGACAATTATCATAGATagttataatatatacattatattagtttaattaaatacagctttatgtattattaatatgttttatattctctctaAAGAATTTTATTTGCATGAGCTTAAAGATTAAAATTGGCTAACATTGATTTTCACTGATGAAGACGGAGTTAATTTTTTCGtacttaatattaaaaaatgttttactaaaaattgaatttaaaaaaaattataaaagaaattgtgattattgttgcccacccctaatacacAGAGCTTACTGTTGTAATACAAATTAATGTAGAATAGACAGCTCAGTAAGGTTTATAATTgttgagtttaaaagctttaaatatgtttgcagtagtaaaacatttaatattgttcTGTTTTGAGAAAATGAGTACAATGTTCAGTatgaaaattattaaacatttataaactctaaa

Function

GO: NA

KEGG:

id description
K06590 ITGB7; integrin beta 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650720.1 lncRNA upstream 73056 36501233 ~ 36503562 (+) True LOC111193778
TU157052 lncRNA upstream 114021 36416808 ~ 36462597 (+) True G116255
TU157016 lncRNA upstream 232724 36342985 ~ 36343894 (+) False LOC103024058
TU156931 lncRNA upstream 269856 36306350 ~ 36306762 (+) True G116155
TU156904 lncRNA upstream 353040 36189774 ~ 36223578 (+) True G116138
TU157176 lncRNA downstream 135404 36732148 ~ 36742014 (+) True G116349
TU157189 lncRNA downstream 226720 36823464 ~ 36831576 (+) True G116359
TU157186 lncRNA downstream 228550 36825294 ~ 36827868 (+) True G116356
TU157183 lncRNA downstream 236745 36833489 ~ 36834522 (+) True G116353
TU157190 lncRNA downstream 244097 36840841 ~ 36843238 (+) True G116360
XM_015607125.2 mRNA upstream 102 36559811 ~ 36576516 (+) True LOC103047611
XM_007254250.3 mRNA upstream 118529 36450998 ~ 36458089 (+) True LOC103021650
XM_007254251.3 mRNA upstream 118529 36450998 ~ 36458089 (+) False LOC103021650
XM_007254252.3 mRNA upstream 126786 36446391 ~ 36449832 (+) True tsfm
XM_007254254.2 mRNA upstream 142774 36428470 ~ 36433844 (+) True sumf1
XM_007254245.3 mRNA downstream 1361 36598105 ~ 36616096 (+) True espl1
XM_007254246.3 mRNA downstream 20632 36617376 ~ 36623011 (+) True pfdn5
XM_007254242.3 mRNA downstream 28291 36625035 ~ 36642464 (+) True LOC103045881
XM_007254243.3 mRNA downstream 28291 36625035 ~ 36642464 (+) False LOC103045881
XM_007254244.3 mRNA downstream 31738 36628482 ~ 36642464 (+) False LOC103045881
trnaf-gaa_2 other upstream 327773 36248773 ~ 36248845 (+) True trnaf-gaa_2
TU156853 other upstream 588558 35982119 ~ 35988060 (+) True G116103
TU156628 other upstream 842259 35730653 ~ 35734359 (+) True G115931
TU156626 other upstream 843039 35730379 ~ 35733579 (+) False G115931
XR_002650721.1 other downstream 60648 36657392 ~ 36713884 (+) False LOC103044253
TU157374 other downstream 503270 37100014 ~ 37111598 (+) False LOC103045245
TU158023 other downstream 2762127 39358871 ~ 39359388 (+) True G116997
TU158258 other downstream 4202727 40799471 ~ 40803543 (+) False LOC103033994
TU158255 other downstream 4202827 40799571 ~ 40803543 (+) False LOC103033994

Expression Profile