RNA id: XM_007254254.2


Basic Information

Item Value
RNA id XM_007254254.2
length 1280
RNA type mRNA
GC content 0.50
exon number 9
gene id sumf1
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 36428470 ~ 36433844 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaaggtcagGTGACTGATCACATGACCAAGTTCACAAAAAATGGCTTCACCCTGGTAAACTCTCTTATAGCGGGCATGGCTCTGTTCCTGTGGAGGTTTGGAGCGTTTCTGAGTGTTGTATTGTACCCGGTACCGCTCACTGTAAGCGGGTCAGATGTTGGAGCGGGTCCGGACTGCGGCTGCAGCGCTCTGAACCGGGAAACGAGCGAGGGAAAAGGCACAGTGTGTGAAAATCCAGCCGATAAATACACTGAAACAGCCAATGGAAACCCTTCTCAAGAGCATGAATATGACTTGCTCAGCAAGATGGTGCAGCTGGAAGGTGGCTTTTTCCTGATGGGTACAGATGTTCCAGGGATACCACAGGATGGGGAGACTCCTCAGAGGAGGGTGTGGATTGACACTTTTCTCATTGAAGAGCATGAGGTCAACAATAAGCAGTTTCAACGCTTCATTAACCAAACAGGCCACATTACAGAGGCTGAGCGATTTGGAGATTCGTTTGTGTTTGAGGGACTGCTGAGCGAAGAAATTAAGAATACTCTGACCCAAGCGGTTGCTGCTGCTCCCTGGTGGTCACCAGTGAAGGGAGCAGACTGGAGACATCCAGAGGGCCCAGATTCAACCATATCCAACAGGATGGATCACCCTGTACTACACGTTTCATGGGCAGATGCTCAAGCCTACTGTCAGTGGGCTCAGCGCAGGCTGCCCACAGAAGCTGAGTGGGAGTTGGCCTGCAGGGGTGGTCTGGAGGACAAGTTGTATCCATGGGGGAATAAGCTGATGCCCAGAGAAGAGCACTATGCAAACCTGTGGCAGGGAGAGTTCCCCAATGTGAACACAGCGGAGGATGGATATTTAAACACATCACCAGTGATGTCATTTCCCGCAAATGGCTTTGGTCTGTATGACATGGTGGGGAATGCCTGGGAGTGGACAGCAGACTGGTGGAACGTTCACCACACCAGAGATGAAGCTCGCAACCCGAAGGGACCAGAAAAGGGAACAGATAAAGTGAAGAAAGGAGGTTCCTATATGTGCCACAAGTCATACTGTTACAGGTACCGGTGTGCTGCCCGTAGCCAGAACACTCCTGACAGCTCCGCGTCTAACCTAGGCTTCCGCTGTGCAGCTGACTCAAAACTATGACCTCTGACCTAGACTGAACCTGCCTCACTGTTTTCCACACTGTCATGTCACTTGAATTTGACTGGGGGGCCATTTTTGCTATGttataatattgtgtttttatctaaataaacatttaaaatgtcgTA

Function

GO: NA

KEGG:

id description
K13444 SUMF1, FGE; formylglycine-generating enzyme

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157016 lncRNA upstream 84576 36342985 ~ 36343894 (+) False LOC103024058
TU156931 lncRNA upstream 121708 36306350 ~ 36306762 (+) True G116155
TU156904 lncRNA upstream 204892 36189774 ~ 36223578 (+) True G116138
TU156858 lncRNA upstream 428414 35990033 ~ 36000056 (+) True G116105
TU156856 lncRNA upstream 444781 35982119 ~ 35983689 (+) False G116103
XR_002650720.1 lncRNA downstream 67389 36501233 ~ 36503562 (+) True LOC111193778
TU157176 lncRNA downstream 298304 36732148 ~ 36742014 (+) True G116349
TU157189 lncRNA downstream 389620 36823464 ~ 36831576 (+) True G116359
TU157186 lncRNA downstream 391450 36825294 ~ 36827868 (+) True G116356
TU157183 lncRNA downstream 399645 36833489 ~ 36834522 (+) True G116353
XM_007254260.3 mRNA upstream 68693 36343130 ~ 36359777 (+) False LOC103024058
XM_007254259.3 mRNA upstream 68693 36343979 ~ 36359777 (+) False LOC103024058
XM_007254258.3 mRNA upstream 68693 36350033 ~ 36359777 (+) True LOC103024058
XM_022675762.1 mRNA upstream 88444 36335569 ~ 36340026 (+) True LOC103023734
XM_022675760.1 mRNA upstream 92980 36330329 ~ 36335490 (+) True efcab12
XM_007254252.3 mRNA downstream 12547 36446391 ~ 36449832 (+) True tsfm
XM_007254250.3 mRNA downstream 17154 36450998 ~ 36458089 (+) True LOC103021650
XM_007254251.3 mRNA downstream 17154 36450998 ~ 36458089 (+) False LOC103021650
XM_015607125.2 mRNA downstream 125967 36559811 ~ 36576516 (+) True LOC103047611
XM_015607126.2 mRNA downstream 142774 36576618 ~ 36596744 (+) True LOC103047301
trnaf-gaa_2 other upstream 179625 36248773 ~ 36248845 (+) True trnaf-gaa_2
TU156853 other upstream 440410 35982119 ~ 35988060 (+) True G116103
TU156628 other upstream 694111 35730653 ~ 35734359 (+) True G115931
TU156626 other upstream 694891 35730379 ~ 35733579 (+) False G115931
XR_002650721.1 other downstream 223548 36657392 ~ 36713884 (+) False LOC103044253
TU157374 other downstream 666170 37100014 ~ 37111598 (+) False LOC103045245
TU158023 other downstream 2925027 39358871 ~ 39359388 (+) True G116997
TU158258 other downstream 4365627 40799471 ~ 40803543 (+) False LOC103033994
TU158255 other downstream 4365727 40799571 ~ 40803543 (+) False LOC103033994

Expression Profile