RNA id: XM_007254266.3


Basic Information

Item Value
RNA id XM_007254266.3
length 2431
RNA type mRNA
GC content 0.45
exon number 11
gene id crbn
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 36039192 ~ 36046913 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTGTAAACAGACGGCGATGGCTGCTGAGAGGGGCGGAGGCGACAACAACATCCACGACGACATGGGCAACCAGCTGCAGCTCGTACCTGAAaatgaggaggaggaagaagatgaCATGGAAACTGAAGACCGTGATAGTGAAGATGCAGAAAAGCCAAGCATTATCAACTTTGACCCAAGTTTGCCGACATCACATGCTTACCTGGGCTCAGACATGGAGGAGTTCCACGGCCGGACTCTTCATGATGAGGACAGTGTGCAAAACTTGCCTGTTCTCCCGCATGCGGCTCTCATGCTGATCCCAGGTCAGACACTGCCATTGCAGCTTTTTCGACCACAGGAGGTCAGCATGTTCCGCAACCTTGTCAGTCATGACCGCACATTTGCTGTGCTTGCACACAGTCCTGATGCAAGTGGGGGAGAGCTAAAAGCAGAGTTTGGGACAACAGCAGAGATTTATGCCTTTCGTGAGGAGCAGGAGTACGGCATTGAGACGGTGAAAATCAAAGCTATTGGGCGGCAGCGCTTCAGAGTGCATGACATTCGCACACAGGCAGACGGGATTCGTCAGGCGAAGGTGCAAATTTTGCCAGAGAGAATTCTGCTTGACCCCTTGAGTGCCGTTCAGCTCTTGTCCCACGTACGCACACATTCACCTCCTACCAAGCAAACACAACCACAGAGCCAAGTGCAACGTTGCCAGGCCTACAGACGGAGAAAGTTATATCCTGCAAGTATGACCCCATGGCCTCCTTGGGTGTATGCCCTTTATGACTCTgagactctaatgAGCAGAGTAAAGCGGCAGCTCCATGAGTGGGACGAGAACCTCAAGGATGAATCGCTGCCTACAAATGCTATAgATTTTTCATACAGAGTGGCTGCCTGTTTGCCAATAGATGATGCTCTTAGACTGCAGTTGCTTAAGATCGGCAGTGCTATACAGAGACTACGCTGTGAGCTGGACATTATGGACAGGTGCACATCCCTATGCTGCAAACAGTGCCAAGACACAGAGATTACAACCAAGAACGAAATATTCAGTCTGTCGCTTTATGGGCCAATGGCGGCTTATGTGAATCCACATGGTTACGTTCATGAGACACTGACTGTTTATAAGGCTAGCAACCTCAATCTGGTTGGAAGACCATCCACACTGCATAGCTGGTTCCCAGGGTATGCATGGACGATTGCGCAGTGCCGGACGTGTGGATCTCACATGGGCTGGAAGTTCTCTGCAGTAAAGAAGGATCTGAGCCCACCACGCTTTTGGGGTCTGACTCGCTCTGCTCTTCTGCCCACAATCCCTCAAGGCGAGGAGGGAGTGGAGGGCTCACGCCTGCTCTGCCTGTGACCTCAGCATGACCCGCGACTCTTCAACTCGCAGCACATAAAACATCCACCACTTTAATCCTTCTCCACTTCACCCTGAAACATCACACTCCAGaccataaagagagagagagagagggtgagaccCAGAAAGACATAGTTAGGGGGGGAAaggagacagtgagacagaaaagtggacagagagggagaaaaaactGGCTTGTAAATTAGTTTCTCTTGAAGAAGTAAATCAGACAGGCCTCAAGGGTCAAAGTGAACCCTGTCAGTTTAAATATGTGGCTTTTACAATCAAATTTTGTTCTGCTGATCATGTATGTTGTTGTAACAGTTCAGCCTTGCATTTGACAACATACACTTATTTCAAGCCcacaatcttttttttcattaagcTAATAAAACGGTCTCCTATTTAAACATGGACATTATGAAAGGGTTAACACATGGTGTTTCTTAATATTATGTTAATATAAACAAACCAACTTCGAAGAGAAGGGACTATTTTGTGCATATTCCTTATCGTACAAAGAAAGATGGTTCCACTgagttagttaaaaaaaaagtcaatcaGTGTGGCATAATGAGCCTGTGTGGTGCTGGATGCCACAGTAACTACTAATAGGGATGATTTATAAAGTAACAGAGTTACTCTTATCATCATTAAGTCATATCAGGGGCATAACTCTGctactgtatttttgtatttcttctCAGCCCCCTTTCCCTTTTTGTCTATGACAATGCTATTGGATGTAGGTGTGTTTAGACACTGAAAGGATTTTGTTAGCAGGTGTTTTGGTAGACAGGTCTGTAAGTAGACTGCAGCCCTTTCTGGAGAAACCTCTATTATAAATGCAGTGTTAGGAAACGGAGTGCATATACACATACTTTAAATACATCCAGGACATCTTGTGCATACCTCAGCAGTCTCACATATCCATAATGTTAAAATGAGATATACAAAATACACTTGACAAGCCACTGACTTGCATATCTGTAACCATAATATTCAAGGGATTCAGGATCCAAAAAGGTGTTCAGTTCTACTAAATATgctaataaaatcatttttggaACGTC

Function

GO:

id name namespace
GO:0071600 otic vesicle morphogenesis biological_process
GO:0060173 limb development biological_process
GO:0016567 protein ubiquitination biological_process
GO:0035118 embryonic pectoral fin morphogenesis biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0031464 Cul4A-RING E3 ubiquitin ligase complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004176 ATP-dependent peptidase activity molecular_function

KEGG:

id description
K11793 CRBN; cereblon

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156858 lncRNA upstream 39136 35990033 ~ 36000056 (+) True G116105
TU156856 lncRNA upstream 55503 35982119 ~ 35983689 (+) False G116103
TU156780 lncRNA upstream 71314 35958543 ~ 35967878 (+) False tomm6
TU156782 lncRNA upstream 71495 35958543 ~ 35967697 (+) True tomm6
TU156781 lncRNA upstream 76283 35958543 ~ 35962909 (+) False tomm6
TU156904 lncRNA downstream 142861 36189774 ~ 36223578 (+) True G116138
TU156931 lncRNA downstream 259437 36306350 ~ 36306762 (+) True G116155
TU157016 lncRNA downstream 296072 36342985 ~ 36343894 (+) False LOC103024058
TU157052 lncRNA downstream 369895 36416808 ~ 36462597 (+) True G116255
XR_002650720.1 lncRNA downstream 454320 36501233 ~ 36503562 (+) True LOC111193778
XM_007254286.3 mRNA upstream 77388 35958630 ~ 35961804 (+) False tomm6
XM_007254288.3 mRNA upstream 83650 35952041 ~ 35955542 (+) True tspo
XM_022675750.1 mRNA upstream 83650 35953216 ~ 35955542 (+) False tspo
XM_007254293.3 mRNA upstream 133174 35901223 ~ 35906018 (+) True ppil1
XM_007254294.3 mRNA upstream 169760 35864138 ~ 35869432 (+) True LOC103033861
XM_007254267.3 mRNA downstream 984 36047897 ~ 36050402 (+) True LOC103026553
XM_022675749.1 mRNA downstream 985 36047898 ~ 36050402 (+) False LOC103026553
XM_022675739.1 mRNA downstream 3597 36050510 ~ 36056356 (+) True tatdn2
XM_022675742.1 mRNA downstream 3597 36050510 ~ 36056356 (+) False tatdn2
XM_007254270.3 mRNA downstream 3597 36050510 ~ 36056356 (+) False tatdn2
TU156853 other upstream 51132 35982119 ~ 35988060 (+) True G116103
TU156628 other upstream 304833 35730653 ~ 35734359 (+) True G115931
TU156626 other upstream 305613 35730379 ~ 35733579 (+) False G115931
TU156625 other upstream 305613 35730653 ~ 35733579 (+) False G115931
TU156582 other upstream 363157 35674648 ~ 35676035 (+) True G115917
trnaf-gaa_2 other downstream 201860 36248773 ~ 36248845 (+) True trnaf-gaa_2
XR_002650721.1 other downstream 610479 36657392 ~ 36713884 (+) False LOC103044253
TU157374 other downstream 1053101 37100014 ~ 37111598 (+) False LOC103045245
TU158023 other downstream 3311958 39358871 ~ 39359388 (+) True G116997
TU158258 other downstream 4752558 40799471 ~ 40803543 (+) False LOC103033994

Expression Profile