RNA id: XM_022675739.1


Basic Information

Item Value
RNA id XM_022675739.1
length 4113
RNA type mRNA
GC content 0.41
exon number 7
gene id tatdn2
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 36050510 ~ 36056356 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGTACTTTtgcaatgtgtatatatatatatatatatatatatatattgagaagTAGGCTTGTTTAGTTTACTAAAATATGTTAGTATGTATTTAGTTCTTAAATCTGCAGGGTAAATAGCCTTTAAAGTATCAtggtacaaaaataatatttagagAAATAAACTGCTCACTTTACATAAAAATCTGTTCCctgaatttattaaaaaattttaTCAGTTGTGAAGAGACGCTTTTATTGGACTgcggtaaaaataaataagtaaaacaaataaaacagtatagTTAATCAAGAAACAATCTGTTAAATGGagtgaaaaataattaaaattgagggaacaattaaatacattatggatttttttaaattaaattaagagcATGATTTATGAAATTAGGAAATTCATttatcaaatcttttttttgtaccttttttattttactaaataagtatttaaaaactttacagtgaAGTTATTTGGTTAGATGTTTGGGTGGTTTGTGGTGGTGAGGCTGTGACCCGCTCACACGGGGCTGCTGGTCGCCGGAGCGCGGTTTTGAAGTGCGAGTTGATCAAGTCGCTAATTGAGATCACCGTTGAACTCCTGCGCAGGTTTGGTAACCCAGCTAATTTGTGATTTACGTGAGTTGGGTTTGACAAAGGAGATTGATGGAGATAGGTTATGTAGTTCGCTAATATGGCGTGGTCTTTTTATAACTAAATGTTGGCTATCACAAGTTAGCTTAAAGGCTATGGCAGTGAACACGCAGGGTTAGGCGGGCAGAAAGTTGACAAGAAAAAGGGACTGCACCTGCCTAAATCTAGTTCGAGTATTGAGAGGTACTTTGTAAGCTCTAATATGTTAATAGTCTAGTACTGAAACTACAAAACGCCTGccccatttctgaatattaataGCAATTAAGATTGAATCAGAGACATTCAGTGAGGAGCTTATTCATGTTCTTTTTCTATTGTGGGCACATGACTAAATATTCTGACACAAAATTCTAGAATATTATATTCTAGAAGTTATGTCAGAACTAGTCATAAGGAGTGTAAATCTAATTTAATTATAGTCTTTCAGATCTGCAGAatcaaaaaatacacttttcaaATGAACAAGTTGTGTCTCCAGCACACATACATTCTATGAATAAGGTTAGATTGATACTCTCAGGATGCTCCAGTATGTGTCACTTAAAAACTTCATGAGTTACAGTGAGCGCTGTAGGGAACCGTACACAGCTTTTGAAGGGTCTGTGATGCATACATCTTTTAGgttaatggcaaaaaaaaatcttattaagtACTGCCAGATGTGCTGTAGTAGAGAATCAAATTAATCGAATTGGTCATTTTTACTACTCGgtaaaattacaattattatccTTACTGGGGCACAACATGTACTTTTATTTCTCTAAAAATATGGCTTCTTTGATTCTGCTAGCATATGTTGTTACTTATTTAACATGGCTCACATATGTTATAGTTGGAtgacttttaattgtttttatacatatttggTTTCCACTCAAACATGGTTCTATTTTCTAGCTCTGCCATGATGAATAGTAAAAGAGGAAAGGTGAAGTTTGGTTGGTTACGTTCATCATTCACCTCGCCCAGAAAGTTCCAGAAGAATGTTGAAGGCTTGGCTCGACCCACGCTCTGGAACGACCCAGAGTCTGAAGAATCGAGTGAGGACCACTCTTCCAGCCTGAACATGTCCACTGGGTCAGTCGAACTAGGCGAGCTAGAAAGCATTAAGCTCAACACACCTAAGGGCAATCAGGCAACACCCACTACCAAAAAGCGCACCCCAAAAAAACATGCCCTGTCTGGTGGCGTGCGCAAACTGTTTGGTAAACAAGCAGTGACTGCAGAGCAAGACGCTCAGCCAGCACGGCAGTCCGCAGTTCCCTCCCCAGCTGTAAAACGCAAGGACAGGACTTCAGAAGAGGGCTCAAAGGCTATCTACCTAAAAGCGCTTACTCAGGCTATAGGAAGTGGTGAAAAGAAATCTCCCCCTACCAAAGACAGTGTTCAGAAACCCTCTGCGAGAAAATGCATCATAGACACACCTGCTGCGCagacaaagaaaaaggaaagaacCTACCTCAGAAAGTCGTTTAGTGATGAGAACTCTGCAGCACTTAAGACAGAAAAACACCGGCATTCCCCGTTTGTTTTCACAGAGACTGAAGTGGAAGAGATGAAAACAGATACCAGGAGTGTGCTTTTGAAAGATGATGAATCACCTGATTGGTCAGATGTTGAGGGCTCTGTTGAGGTGGAGACTTTTTCCCAGGACGAGTCTCAGGATCAACTTACAAGGCAGAAAGTAGAGTGTGAGCATGGAAGAGAAATTGAAGACCCTGAAGGCCCACCTCCTTTGGAATATGTGCCTATCCAACCTCCAACATACATGCTATCCCAACGGTTCCCGCAGCCCACATTTGGTATGCGATGGATGACCCCCCACCAAAGTTCCCCTACTTCTACAGGTACAGAGACCTCTGGGCAATCCTCAGTGGCTTCGAGAGAATTGTTCTTGTCATCAAGGCCTACCTTTCAAGATATAACACCTGGTTCTTCAGCCTCCAAGACTGTACGTCTGCCTAATAGTTCATTTGTGGCATTGGGACGGGGAGTTAGATTACCGCAGCCAATCAGCCAGTCTTCTTCATCTCCAGACCCATATGCCCTACccggcagagctttcagaactgaATCCCCTGTCCCACATTCAAAGGGATTGTGTGAGTTCTCTCCTATATTGCAACACAGGTTCTCAGATTCAGTCAGGTTCTCTGCATCAAGGAGGTCTTCTACCACTAATGTTGCCACCCGGAGGATGTCTGAGGGTTCTGAGCCTCTCTGGTTAACATGCTCGGATCATTCTATAACAGGCTCCCAAGAATTTCTAGACACCCACTGTCACCTGGATATGCTGTATGGGAAATTGGGCTACCAGGGAAGTTTCCAAAACTTTCGGAAGGAATATGCCAGCAGTTTCCCTGTGGAGTTTGGTGGGTGCATTGCTGACTTTTGCAATCCAAGGATTACACAGAAAGAGGCTATCTGGGAGGGACTTCTGGGTGAGGAGTTAGTATGGGGTGCATTTGGATGCCATCCACACTTTGCCAAGGAATATAACAACAAGCATGAAGAAAGCATCATGAGAGCCATGCGTCATCCCAAGACCATTGCGTTTGGAGAAATTGGATTAGATTATTCTCATAAGAATTCCACTGACTccaaaagacagaaagaggTGTTTGAGCGGCAGCTGCGATTGGCTGTGTCTCTAGGAAAGCCTCTGGTTATTCACTGCCGTGATGCTGATGACGATTTGCTGGAGATCATGAAGAAGTGTGTACCTCGAGACTACAAAATACACagACACTGTTTCACCAACAGTTACTCTGTAATCGAGCCATTCCTAAACGAGTTCTGTAATCTGTGTGTGGGTTTCACTGCGCTGGTAACATACCCTCGTGCTGTGGAAGCTCGGAATTCAGTCAGGAAAATCCCACTAGATCGCATCCTGCTGGAGACTGATGCCCCGTACTTCCTGCCCAGACAGGTACCCAAGAACGTGTGTAGGTTTGCTCACCCTGGAATGGGGATACACACCTTGCGCGAGATCAGCATGCTGAAGGGAGAAGCCCTCCCAACCGTTCTCAAAAAAGTCCGCCAGAACACCACACACATCTATGGCCTGTAAGCATCTCAAACCTGCTGTCGCTGCCTGTTACCTTGCTGATCTGCAGTAATTGCATACCATGGAATCTACTGTACGTATCCTAACACTCATTGACTCCATGTTTTCTGTCAGAACTATGATGAGCTCCATGTGTAAATTGGTGTGCTgaactaactaaaaaaaaaaaaaaaagtatgttgtTTTATAGTACCCTCTGTtcgttttaaaatactttaaaatagtataatagtTCTGGTTTGACTTCTGTTATTTGTGTGCTTGCTTTCAGTGTGTGGTTGTGTAAACATTTGaatttgtgttgtgtgtgagtgtgtttttcaAAGCATACAATACCatacttttgttttttctattaaaataagAAGGTGACGTTTACTgtg

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters molecular_function

KEGG:

id description
K03424 tatD; TatD DNase family protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156858 lncRNA upstream 50454 35990033 ~ 36000056 (+) True G116105
TU156856 lncRNA upstream 66821 35982119 ~ 35983689 (+) False G116103
TU156780 lncRNA upstream 82632 35958543 ~ 35967878 (+) False tomm6
TU156904 lncRNA downstream 133418 36189774 ~ 36223578 (+) True G116138
TU156931 lncRNA downstream 249994 36306350 ~ 36306762 (+) True G116155
TU157016 lncRNA downstream 286629 36342985 ~ 36343894 (+) False LOC103024058
TU157052 lncRNA downstream 360452 36416808 ~ 36462597 (+) True G116255
XR_002650720.1 lncRNA downstream 444877 36501233 ~ 36503562 (+) True LOC111193778
XM_007254267.3 mRNA upstream 108 36047897 ~ 36050402 (+) True LOC103026553
XM_022675749.1 mRNA upstream 108 36047898 ~ 36050402 (+) False LOC103026553
XM_007254266.3 mRNA upstream 3597 36039192 ~ 36046913 (+) True crbn
XM_007254286.3 mRNA upstream 88706 35958630 ~ 35961804 (+) False tomm6
XM_007254288.3 mRNA upstream 94968 35952041 ~ 35955542 (+) True tspo
XM_007254275.3 mRNA downstream 5109 36061465 ~ 36066292 (+) True ccdc174
XM_007254276.3 mRNA downstream 10621 36066977 ~ 36075546 (+) True LOC103028900
XM_022675755.1 mRNA downstream 73628 36129984 ~ 36195424 (+) True col7a1
XM_022675756.1 mRNA downstream 73628 36129984 ~ 36195424 (+) False col7a1
XM_022675757.1 mRNA downstream 149316 36205672 ~ 36218972 (+) True LOC111193774
TU156853 other upstream 62450 35982119 ~ 35988060 (+) True G116103
TU156628 other upstream 316151 35730653 ~ 35734359 (+) True G115931
TU156626 other upstream 316931 35730379 ~ 35733579 (+) False G115931
TU156625 other upstream 316931 35730653 ~ 35733579 (+) False G115931
TU156582 other upstream 374475 35674648 ~ 35676035 (+) True G115917
trnaf-gaa_2 other downstream 192417 36248773 ~ 36248845 (+) True trnaf-gaa_2
XR_002650721.1 other downstream 601036 36657392 ~ 36713884 (+) False LOC103044253
TU157374 other downstream 1043658 37100014 ~ 37111598 (+) False LOC103045245
TU158023 other downstream 3302515 39358871 ~ 39359388 (+) True G116997
TU158258 other downstream 4743115 40799471 ~ 40803543 (+) False LOC103033994

Expression Profile