RNA id: XM_007254279.2


Basic Information

Item Value
RNA id XM_007254279.2
length 4805
RNA type mRNA
GC content 0.45
exon number 21
gene id LOC103029739
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 36013177 ~ 36029775 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGAGTTTGATACAGTTACTCAGCTCTGACTCTATTTTTGAGAGACTTATCTGAACGCTTTTCCTCAGGAAGCGGCGCGCAGTCTGAGGCCCCGCCCACCGCGCGCTTAGCGCTCGAGTCTCAGACTGTCCCCTGATTGAGCTGGTGGTCTGTGCTGTAGTGCAGCGGTGTAGCAGAAATACTTGAACAGACcgcttattaataataaactgttCTAAACTGAACCGCATACATGTACGGATTTTCTACATTCTGAACCCTGGAGAAGACCATGTGCCAAAATGAGCGCAAAACTAGAAGATCGCAGATCCCAGAGCCATGTTTGTCGTTCTAATGAGCAGTTAGGTCCACTGGCTGGAAAGTGCTGTCATCATCAGGGATGTAAACCAGATACTGCCCCAAAACCAAGATCAAACTCCAGACAGTTTCCTCACTTAAATAATTACTTGAAGAAATACACTAATCGAAACCTGACACCTGCTAACGTAGAGGCGCACCCTTTGAAAATCCACAGGAAGCAGGTATTTGGACACTTAAGACATGAAAATGACTTAAAACAAAGGGAGGCGTCAAAACCATGCAAAGACATAGGACATAAAGAACGGTCAATGCAATGGGAGGAGTTTACTGAAGTGGACAAGAAGGAGCACAGTGACCAAGGGGAGGAATTGGGCTATGGGGAGGAGCTGGCACAAGGCATTGAGCTTGATTGGGAGGTGCGTTTACATCATGGGGAAGGATTTGACTCTGAGGAGGGTGAGGGGCCCCGGGAACTTCTTTCTGACTCCTGCAGTGACAGGGATGAGGAAGTGCAAGGAGTGGCAAGACAGCTTCACAAAGTAGCGGAAAGAGAGGAAGGGTGGGAAGTGGTTGGGAATGGTGAAACAGGGTCACCCCGGAGTCTGGTTGATGTTCATTTTGGCATACAGTCAACACCTTATACACTTTACAAAACAATGATACATGAAACAAATAGAAACAAAATTCAGGCTTCATCTCTGAAGTTAAGAGACAATTTGTATACTGATGAAATTTTCAGTGCTAAAATGCTGTCAAATGGATTGTATTCAAATCACCTTTACTCCAATGGAATCAACACAAATGAGTTGTACCCAGATGGAACTGACACAGTCGCCATGTTTCCAGATGTGTGTGATGCGGGTGAAGCTCTGGCTGATGCCGATGGGCTCTCAGAGTGTGATCTTTTTGAGCAGACTGAAGCATCTCAGACATTGGAAGCGGAGGAGGTGGGTGATCCTGGGGATACGGTAATGCTCTCTGTGGAAGAGGGTTCTGAGAATTCAAGTGCATCTATATCGAACTTTGGGGAAGAGGGGGGTGAGGAAGAAAACAGTTCTCTCTCACTGAGGAATTCTTCTCAGGATTTACATTGCGAAACCTCTCAAGATTCTTCACTGTCAGATTCTACACTTTATGcaaagtcagagagagaagcTGGAATTCTCTCAGAATCATCTCATCAGCCTTCATCATCCTTCTCTTCATTCTGCTCATCTCAGTCTGAAATCACTTCAGATGAAGCGGAAAGCAGTGAGACCCTTCACTTTCACTGGAGTGAAATTGAACGTGCCACTCCGTCCAATGAACCTCACTTTAATACAACATTTGATCTTGACCTACCATGTTTCTCTTCACCAATACAGCCTGAAGACCAAAAATCACACCAGACACAGTTTGATGAACACGGAAAAGAAATATCAAATGCCCAGGGGGATCAGTTAATAATACCAACAGAGAACCCTAAGGTTCAGTCAGAAGAGCATGTGTATGAAGAAACCGAGCCAAAATTCCAACCCAAAAGCTTCCTGCAGACTAGGAAGTATTTAATGACTCGTTCCATCTCCATGGAACCTCCCTCTAACAGACTGGAACCAATGAACTCCACAGTATCAGGAAAGGAACGCTTGATGctacacacacagtcttactATACAAGTCATGATTTTCTGGGAGAAAGCTTGCCAGCCCTCACTGGCTCCTTAGGATGTCTCTCACCAGGATGTCCCTGCCCCCCCAGTGATCTAGGCATGAATAGCCATGACATACCACCCCCCTTCGAACTCTCTTCCATCACAAAGCGGCCAATTAGAAAAAGCACACCGGCTCTTCCAACCGATGTGTCTGCTTCATGCAGAAAACTGGACTTTGGCTTCAAACGCTACTTCTTGCCTTTACGGTTTCTGAGGAAATCTGAAAGAAGGAGCTTGGCTGATAACCGCTCCGTCTCCTCCAGATCCTCATCAGAATCAAGTCCACAGGGTTCTTGCAAAAGGCTGAATTTAATCAGGCAAAACGTAGGCAGCCCTGAACTCCACAGAGTACATGATTCTTCCCTACCATCATCCCCATCTTCCTTCCTTTATCAGAAGAacaagcagaggcagggccttaaCACACTTCTCAACAGCAACGTGTTGTCTGGTATTCCTAGTTCCTGGGACACTGATGACTTTCTTCACTCCTCTTTTACTAAGCCCTTTCCCCTTTCAAAACCTCGTTCTTTTTCTTCGCCCAATGTTGACTCGTCAGTGTACGAGAATGTTTTAAGCCCAAGTCCACACTATGAGAACGTGCAGCTACGCCTCTTAAATCCCACCAGTCAGAGGCACCGGAATCAGAGTTCTGCCAATGATATTGATGGTTACGTGGATATGAGCAGTCTGCCAGGCTTTCAGAGCAAGAGCCAGTCATCagaacaagagacagagagTGCCTATACTATCTGCTCTCCTGCTGTGAGGTCAGATGGATCAGTGAGTGTATCTGTAGGAGTGCCTTGTATaaaaaaggaggagaagaagggaTCAGAAATACTGACTGTCACTTGTTCTAGAGCATTTTATAGTGCAAAAGAGCTGCTGGACAGCGAGGCACAgcatttaaagaATTTGAAGCTTCTGACCGAGACTGTAGGTGGAGATGAGACACTAGGAGAACTCTGGAGTGATTTGCCTGCAATTTACACACTCCACCAAGACCTCCACACCCAACTGGAATCTCGGATCAAAGAGTGGGAGCAGAAGGAGGGAATTGCTGATATTATCTTGGATAAAAAAGCagagttttcatttttttcctccttcATCACTCACCATGACAGCAGAATGAAGTCTCTGGAGCAGATGGAGAACACACAGTTGGACATGACTTCTTTGAAGCAGCAGCTGCTGCAGGTGATTGTGAGAGTCCTGCAGTACCGCATGCTGCTAACAGattacaTGAATAATATTTCACCAAACACAAGCGAGTACAAGGATACTCAAGATGCTTTGACAGTGGTCTCTGATGTAGCTGACCTGACCAATGAGAGCCTCAGCAATGGAGTGGCTCTTCTGCGTCTGGTTCATATTGAGCACAATGTTTTAGGCTTGAAGAACTTACTACAGCCTAACAGGgtttttgtGAAAGAAGGCACCTTAATGAAGGTCAGCAGAAAGTCCAAACAGCCTCGTCACCTGTTCTTGATGAGTGATATAATGCTTTACACATACCCCCAACAAGATGGCAAATACAGACTTATCAACACTTTGACACTGACAGGAATGGAGGTTACTAAACTGATGATAGATAATACTCAGCATGCATTAAAGATTGAGTTAAAGGATACGTGTATCACTTTATCAACAAGCTCTTCTATAGAGAGGGATGATTGGTTTGTTACACTGAATCGGACAATAGCTGACCTCGGTTCAGTACTGGGGGAACCCACAGGCTGTTTAGAGttTGGGGAAACTGTGGAGGCGTGTCTAGGAGAAAATGCTCCGCCTCTGGTGTCTGTTTCTCAGGTGTCAGTATGCATGAACTGCCCTGTCCGCTTCAGCCTCACACACCGAAGGCACCACTGTCGAGCCTGTGGCaagGTTGTATGCAGAGACTGCTGCAGGAATAAAGTCCCTCTAAAATACCTGAAGAACAGACGAGCCAAAGTGTGTGATAAGTGCTACAGTGAGCTTTACAAACCAGATGAAGATGTTGCCATGGGAACGGGGAGCTCCAGTAGGCCACTGTCTGCTGTTTTCCAGAACATCCATCCCACCAGTCTGTGGAGGGGTCGCAAAGGCCAGTTGACTTTTAACCAGgggaTAGGGCCAGAGGGGGAGATGAGTGGGACTCTGGAGAGAAGTCGAAACAGTAGGCGGAGCTGGAAGAGCCTGTGGTTCCTTCTGAAAGATAAAGTGCTGTATACATACCCACAGCCTGAGGAGAGAATTGCGTGTGAGTCTCTTCCTCTGTTGGGTTTTTCGGTGAGGCCAGAAATTGAAGGAGAGAGCAGTGTGTTTCAGCTCTACCACAAAACAACACTTTACTATACATTCAAAGCTCAGGATACACACACTGCTCAGAGGTGGGTGAGTGCTATGGAAGAGGCCACAGTCctgtagctgctgctgttttagaAGGGCTGTTATCTCCCTTAAACTAAGACAAAATCCACACCTGACAAATGAAGAGTCCTGCAGTGTCATCACTACTTCAAATTGAAGCAGTTGTCAGATTGTAACAGTGCTAGGAGagccaaaaagaaaaacaaacccGCTTAGTGCTGGTCATTTATTAATGTAGAGAAGCAATCATCTGCCTATATAACTGTTATTTCTTATATATTGTTACCTTTCTTTTGTTatcttttatctttatatttatatgtcagttttttacatttgtacTAATTATATTTTGTAACAGGAACTGCATACGTAAGCGTAGCTtttgatatttcttttttttttataattttatttctaatttttcccattttctccccaatttacacggccaattacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156845 lncRNA downstream 64995 35947731 ~ 35948182 (-) True G116097
TU156813 lncRNA downstream 79931 35930934 ~ 35933246 (-) True G116076
TU156836 lncRNA downstream 107175 35901252 ~ 35906002 (-) True G116092
XR_002650715.1 lncRNA downstream 114460 35892638 ~ 35898717 (-) True LOC111193771
TU156833 lncRNA downstream 131610 35881367 ~ 35881567 (-) True G116089
TU156944 lncRNA upstream 13591 36043366 ~ 36044196 (-) True G116166
TU156952 lncRNA upstream 35840 36065615 ~ 36066279 (-) True G116171
XR_002650717.1 lncRNA upstream 45703 36075478 ~ 36076803 (-) True LOC111193773
TU156977 lncRNA upstream 164770 36194545 ~ 36254205 (-) True LOC111193775
XR_002650718.1 lncRNA upstream 165044 36194819 ~ 36254094 (-) False LOC111193775
XM_007254281.3 mRNA downstream 13260 35982094 ~ 35999917 (-) True LOC103030273
XM_007254282.3 mRNA downstream 33631 35969145 ~ 35979546 (-) True ddi2
XM_007254283.3 mRNA downstream 33631 35971597 ~ 35979546 (-) False ddi2
XM_007254287.3 mRNA downstream 45387 35960653 ~ 35967790 (-) True LOC103031953
XM_007254284.3 mRNA downstream 54359 35955312 ~ 35958818 (-) True LOC103031109
XM_007254265.3 mRNA upstream 6597 36036372 ~ 36039135 (-) True LOC103025932
XM_007254273.3 mRNA upstream 26795 36056570 ~ 36062284 (-) False LOC103028059
XM_022675752.1 mRNA upstream 26795 36056570 ~ 36061712 (-) False LOC103028059
XM_022675753.1 mRNA upstream 26795 36056570 ~ 36061450 (-) False LOC103028059
XM_022675751.1 mRNA upstream 26795 36056570 ~ 36061435 (-) False LOC103028059
TU156811 other downstream 54748 35955109 ~ 35958429 (-) False LOC103031109
XR_002650714.1 other downstream 132886 35869803 ~ 35880291 (-) False LOC103034399
XR_002650713.1 other downstream 132886 35869803 ~ 35880291 (-) False LOC103034399
TU156800 other downstream 197855 35813621 ~ 35815322 (-) True G116068
TU156262 other downstream 1490759 34520957 ~ 34522418 (-) True G115681
TU156955 other upstream 26788 36056563 ~ 36061929 (-) True LOC103028059
XR_001518677.2 other upstream 993616 37023391 ~ 37031360 (-) False LOC103023810
TU157486 other upstream 1011586 37041361 ~ 37045788 (-) True G116581
trnaq-uug_2 other upstream 1063224 37092999 ~ 37093070 (-) True trnaq-uug_2
TU157786 other upstream 2351495 38381270 ~ 38384598 (-) True G116805

Expression Profile