RNA id: XM_007254288.3


Basic Information

Item Value
RNA id XM_007254288.3
length 1020
RNA type mRNA
GC content 0.44
exon number 4
gene id tspo
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 35952041 ~ 35955542 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGCTTCTGCGGCAGAATCAGCGCTCGTTTGTGAACTTTCAGCACCTCAGCTCAACATCATGTGTATCACATTACATCAGACAAGGAACCGACGGTCAGTTTTGTGGTTACGAAACTCAGCGGGTATGGCGCCTCATTTCGTAAATGCCTACACGCCCACTGCTGCACTGTTATCTAAAAACTCAGCTCTCAGCGTCACTGCGGTCTGGAGGACACCAGAACCATTAGCTGGGGGACTAGGGCCTGTCACTTGAAGATATGTGGATTCCATTGTTGGGTCTGACTGCTTTACCACATGTTGGTGGGCTCTATGGCGGGTTCATCACAAGAAAAGAGGTGAAGACCTGGTACACTACACTTAACAAGCCATCATGGAGGCCACCCAATGCTGCTTTTCCAGTGGTGTGGACCACGCTCTACACTGGCATGGGgtATGGTTCATACCTGGTGTGGAAAGAGCTGGGAGGCTTCAATGAGAATTCACTGGTTCCACTAGGGCTTTATGGCCTGCAGCTGGCACTGAACTGGGCTTGGACCCCAATCTTTTTTGGagcacacaaaataaaactgGCACTTATTGAGCTTGTGATGCTCTCGGGTACAGTGGCAGCTACCATGGTGTCTTGGTACCCAGTGAACCGTACTGCTACACTCCTGATGGTCCCATATATGGCCTGGCTCTGCTTGGCCACATCCCTTAACTACTGTATCTGGAGGGACAACCCAGAAACTAAAAAGGACTAGAGTGgacaaaaaggaaacaaaattaATGCACACAAACAGCAAGATATAATTTTCAACAGTCAATAACAAGAATCTGCCTTTAATCACATTAAGTGCATATTCAAGTGATATCTTATTATACACTTGGCAACCAATattgaaaaagtgtgaaaattaGATTAGATGTTTTATACTAACATTTTGCCTGCTTCCATGctaattttatattgtttaaattgCACTATGTAATtcttccaaaataaaataataaaaaaatgcatgtgaCATGTTGACTGTG

Function

GO:

id name namespace
GO:0060319 primitive erythrocyte differentiation biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K05770 TSPO, BZRP; translocator protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156773 lncRNA upstream 18835 35930924 ~ 35933206 (+) True G116050
TU156763 lncRNA upstream 52648 35894947 ~ 35899393 (+) True LOC111193772
XR_002650716.1 lncRNA upstream 52960 35894986 ~ 35899081 (+) False LOC111193772
TU156743 lncRNA upstream 89218 35862214 ~ 35862823 (+) True G116020
TU156580 lncRNA upstream 275200 35676178 ~ 35676841 (+) True G115915
TU156780 lncRNA downstream 3001 35958543 ~ 35967878 (+) False tomm6
TU156781 lncRNA downstream 3001 35958543 ~ 35962909 (+) False tomm6
TU156782 lncRNA downstream 3001 35958543 ~ 35967697 (+) True tomm6
TU156856 lncRNA downstream 26577 35982119 ~ 35983689 (+) False G116103
TU156858 lncRNA downstream 34491 35990033 ~ 36000056 (+) True G116105
XM_007254293.3 mRNA upstream 46023 35901223 ~ 35906018 (+) True ppil1
XM_007254294.3 mRNA upstream 82609 35864138 ~ 35869432 (+) True LOC103033861
XM_007254299.3 mRNA upstream 90610 35858681 ~ 35861431 (+) True LOC103035259
XM_007254305.3 mRNA upstream 97950 35849749 ~ 35854091 (+) True c13h1orf159
XM_007254302.3 mRNA upstream 107508 35839437 ~ 35844533 (+) True kbtbd12
XM_007254286.3 mRNA downstream 3088 35958630 ~ 35961804 (+) False tomm6
XM_007254266.3 mRNA downstream 83650 36039192 ~ 36046913 (+) True crbn
XM_007254267.3 mRNA downstream 92355 36047897 ~ 36050402 (+) True LOC103026553
XM_022675749.1 mRNA downstream 92356 36047898 ~ 36050402 (+) False LOC103026553
XM_022675739.1 mRNA downstream 94968 36050510 ~ 36056356 (+) True tatdn2
TU156628 other upstream 217682 35730653 ~ 35734359 (+) True G115931
TU156626 other upstream 218462 35730379 ~ 35733579 (+) False G115931
TU156625 other upstream 218462 35730653 ~ 35733579 (+) False G115931
TU156582 other upstream 276006 35674648 ~ 35676035 (+) True G115917
XR_002650711.1 other upstream 392315 35555979 ~ 35559726 (+) False LOC103045376
TU156853 other downstream 26577 35982119 ~ 35988060 (+) True G116103
trnaf-gaa_2 other downstream 293231 36248773 ~ 36248845 (+) True trnaf-gaa_2
XR_002650721.1 other downstream 701850 36657392 ~ 36713884 (+) False LOC103044253
TU157374 other downstream 1144472 37100014 ~ 37111598 (+) False LOC103045245
TU158023 other downstream 3403329 39358871 ~ 39359388 (+) True G116997

Expression Profile