RNA id: XM_007254312.3


Basic Information

Item Value
RNA id XM_007254312.3
length 1503
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC103038900
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 35796279 ~ 35801173 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TACCTTTTCTTACTGAGATCATAGGCTTCTGGGTAATCGGACGCGGCCATTCGTGCGTATACACTCCCCTTCGTGCACTACTTCAGCGCTGTGATTTGGGACGCGGCCCGGTTGATGGTGTGTCACCCAAAGAACGCCGAGCCTCGCGGAAGCAGCTTGATGTTTCCGCCTTGTACCGCGACGCCGCTTACATCGAAATGACGGCGACTTTGCGTCCCTACCTAAATGCAGTGCGTGCTACGCTACAGGCAGCTCTCTGTCTGGAGAACTTCTCTTCGCAAGTGGTTGAGCGCCACAACAAACCTGAGGTTGAAGTAAGgaGCAGTAAGGAATTATTGCTTCAGCCTGTTGTGATTAGCAGGAATGACAAAGAGAAGGTCCTTATTGAGGGTTCCATCAACTCTGTGCGTGTCAGCATTGCAGTGAAGCAGGCTGATGAGATTGAGAAGATTCTGTGCCATAAGTTCATGCGCTTCATGATGATGAGAGCAGAGAACTTTTTCATTCTGCGGAGGAAACCTGTAGAGGGCTATGATATCAGTTTTCTCATCACTAACTTCCACACAGAGCAGATGTATAAGCACAAGTTGGTGGATTTTGTCATTCATTTCATGGAAGAGATTGACAAAGAAATTAGCGAGATGAAACTCTCAGTTAATGCAAGGGCACGAATAGTCGCTGAAGAGTTCCTCAAGAACttttAAGGAAGTGGCCCTGGATCCTCAGCAAAGTGCAAGACTCACTTCACCACAATCAACAGAAATGTGGCTGAAGGTTTTGGGCCCAGAGAGAGAAGTGAGCGAGAGAGCCAATCAGCATGGAGCACCACAAAAGGGGACCAACTGAATGGAGGGGGTGTGCCCTTTGCCACAGGACTGAATTCAGAGTATTGCAGTGAAACAAAGAGCACGGATGGAATTTAATGACAGCACTCTGATCTCTCTCTGTACTGCACAACTCTGACTCTGCTTTtcatctgcattttttttttctttcatgggCATTATGTGCATTCATATTGCTAATTTTTACTCTTATTTTGATTTGTTCTCTACAGCATTCCTGCGCCCACTGCTACTTCTTTTCATTATTCTGTTGCTGTAGCAAAGTGCTCATagtgttgcaatattttgaattCACCTCACCTTTCCTCCATGCtcatgaatattaaatattatacacaaAGCTGATATGCATAAACACGTTTTACCTCTAGCCTTGGAATATTCCGTAACTTGCAGGCAggtttttttgaaaaaaaaaaaaaaaagtcagcatTCATGAGCATAAAGGAAAGTATGCTGATATTCCAATAATGTAAAcagtttcttctttttaaaaaataaatataaatatgtaaactgTGTGCATAATGCCATTTGTTATGTTTAAGTTTAGATATAGAGCTTCACACTGGTGCACAAAAACCACACAGACCTTATTACCGCTGGACACGATTGTcaaatatgattaaataaatcTTTTCATTGATTGTATCTGTAA

Function

GO:

id name namespace
GO:0034314 Arp2/3 complex-mediated actin nucleation biological_process
GO:0005885 Arp2/3 protein complex cellular_component

KEGG:

id description
K05755 ARPC4; actin related protein 2/3 complex, subunit 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156580 lncRNA upstream 119438 35676178 ~ 35676841 (+) True G115915
TU156583 lncRNA upstream 120244 35642874 ~ 35676035 (+) False G115917
TU156600 lncRNA upstream 131402 35661443 ~ 35664877 (+) True G115925
TU156520 lncRNA upstream 246732 35535980 ~ 35549547 (+) True G115876
TU156517 lncRNA upstream 264258 35529492 ~ 35532021 (+) True G115874
TU156743 lncRNA downstream 61041 35862214 ~ 35862823 (+) True G116020
TU156763 lncRNA downstream 93774 35894947 ~ 35899393 (+) True LOC111193772
XR_002650716.1 lncRNA downstream 93813 35894986 ~ 35899081 (+) False LOC111193772
TU156773 lncRNA downstream 129751 35930924 ~ 35933206 (+) True G116050
TU156780 lncRNA downstream 157370 35958543 ~ 35967878 (+) False tomm6
XM_007254311.3 mRNA upstream 1764 35793419 ~ 35794515 (+) True LOC103038587
XM_007254309.3 mRNA upstream 6913 35785042 ~ 35789366 (+) False rab7a
XM_007254310.3 mRNA upstream 6913 35785058 ~ 35789366 (+) True rab7a
XM_007254315.3 mRNA upstream 49979 35740557 ~ 35746300 (+) True eefsec
XM_007254322.3 mRNA upstream 66747 35723719 ~ 35729532 (+) True rft1
XM_007254307.3 mRNA downstream 3921 35805094 ~ 35818581 (+) True LOC103037527
XM_022675736.1 mRNA downstream 4896 35806069 ~ 35818582 (+) False LOC103037527
XM_007254300.3 mRNA downstream 19308 35820481 ~ 35828881 (+) True p4htm
XM_007254302.3 mRNA downstream 38264 35839437 ~ 35844533 (+) True kbtbd12
XM_007254305.3 mRNA downstream 48576 35849749 ~ 35854091 (+) True c13h1orf159
TU156628 other upstream 61920 35730653 ~ 35734359 (+) True G115931
TU156626 other upstream 62700 35730379 ~ 35733579 (+) False G115931
TU156625 other upstream 62700 35730653 ~ 35733579 (+) False G115931
TU156582 other upstream 120244 35674648 ~ 35676035 (+) True G115917
XR_002650711.1 other upstream 236553 35555979 ~ 35559726 (+) False LOC103045376
TU156853 other downstream 180946 35982119 ~ 35988060 (+) True G116103
trnaf-gaa_2 other downstream 447600 36248773 ~ 36248845 (+) True trnaf-gaa_2
XR_002650721.1 other downstream 856219 36657392 ~ 36713884 (+) False LOC103044253
TU157374 other downstream 1298841 37100014 ~ 37111598 (+) False LOC103045245
TU158023 other downstream 3557698 39358871 ~ 39359388 (+) True G116997

Expression Profile