RNA id: XM_007254315.3


Basic Information

Item Value
RNA id XM_007254315.3
length 2749
RNA type mRNA
GC content 0.46
exon number 7
gene id eefsec
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 35740557 ~ 35746300 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAGAACGTTAGCTGGCCCTTTCCGTTGGTGGGCGAGTTTAAAGATCCGTCTAGAAAcagaagctaagctaactataACTGTGCGCTGcgtgctttagctagctaacgtaaGATGTTTCACTGCAGGTTAACTTaagttatatataaattttctttaatttttttattattattttataaatgttggggattctgcattgttttttgtcttacatcatattttagttttagcatCGTTTGAATTTATCTAAGTCCTCAGTCAAGATGTTTTTGCATAAAAGTGCAGTCTTGTGGATTTATACGTAGCTAAACAGAGCTATCTTGTTTTTggtactattttattttatttacttacttgtattatattataacttTACTTGCAGTAGGTCAGCAGCAGCTCATATAGCTTAGCTAGTCAGCTAGCTAACACTATCCACTACCTACGTTTGGGTCCCATTCCCTGAGACATGTTCCGTAGGTGGAGGTAGTGTTTTTTAGGCGACGCAGGAAGTGTAGTTAGCGTATCTGTCAAACGATATGATATGGCGCACTGTCTGTATAGGAGGGAGTTGATTCGAGTTGGTTCAGTTTGAAATTACTCGTTTTTGACATCTGAGAGGTGCTTGAGTTAAACTGCATCCAGCTAACTTACAAGATCTGTGTTTTTCAGCagcacaacttttttttggtgtgaATTAAGCTGAAAGTGCACAGTCATCTTAGATCAAAGTCCACTGCTTCCCTATTGTGTCTCGTTCGGATCCTGTCTTTAATTCTTCCACACATGGCAGATCCGAGCGCTAACGCTGGGGACGGCCTCCTCCCCCAGATTCTGAACTTTAATGTGGGTGTCCTGGGCCATGTGGACAGCGGGAAGACGTCTCTAGCCAGGGCTCTGAGCAGCACCGCCTCCACCGCTGCCTTCGACAAGAACCCGCAGTCCAAAGAGAGAGGCATCACCCTGGATCTGGGCTTTAGCGCCTTCACCGTCCCTTTACCGTACCACCTTAGAGAGGCCTGCGGGGAGAGAGCGTACCACAGCCTGCAGTTCACACTGGTGGACTGTCCGGGGCATGCCTCACTCATACGGACCATAATTGGAGgtgCTCAGATTATTGATCTGATGCTGTTAGTGGTTGATGTGGTAAAGGGCATGCAGACACAGACTGCAGAGTGTCTCCTGATTGGTCAGCTCACCTGCTCCAGGATGATTGTCATTCTTAATAAAATTGACCTGTTGCCTAGTGACAAGAAACAGAGTGCCATCGATAAGATGACAAAGAGGATGCACAAAACTTtggagaacacaagGTTTAAAGGTTGCCCTGTCATTGCTGTGGCAGCAAAGCCAGGGGGTCCGGATGCTCCAGACACAGAGGAAGGACAGGGAATTACTGAGCTTATAGAGttgCTAAAGACTCAGGCTTTCCTGCCTAAGAGAGATCCATCTGGTTCCCTGCTTATGGCTGTGGATCACTGTTTCTCCATCCGTGGACAGGGAACAGTCATTACAGGCACCATTCTACAGGGGGCGCTGCGCGTCAATGACACACTGGAGATACCTGCACTTAAGGTCACCCGGAAGGTGAGGTCAGTACAGATGTTTCGTAAGCCAGTTCCTAGTGCGATACAAGGAGACcgggttggtgtgtgtgtgacacagtTTGACCCAAAACTGCTGGAACGTGGTGTGGTGTGCACACCTGGCTCCCTGCGAACTCTTTATGCTGCCATAATTTCTGTGCATAAGATTGAATACTACCGTGGTGCACTTAGCAGCCGTTCAAAGTTCCACATCACCGTTGGACATGGAACAGTCATGGCACGTGTGTCATTCTTCAGTAGGGTGTCTCGCAGCATCCCGTCTGGAGCCTCAGATGGAAGTCCCTCAGAGCAGGGCATGGACTCTTTCTCCTTTGAGTGGGAGTTTCATCACCAGGAGGAGTTTTTGAGCAGTCCGGGAGAAACTGAGGGGAAGGAACCACAGCAGTGGGCGTTACTGGAGTTTGAGCAGCCAGTAACATGTCCACCACTTTCTTTGGTGATTGGCTCACGGCTGGACTCTGACATACACGCTAACACATGTAGGCTTGCATTTCATGGAAAGCTTTTGGAGGGCTTTGAGGACAAGAACTACACAGAGACTACATTACcgaaactcaaaataagcaaagACAAGCATAAAGAGGGAGCAGTGGAACGGGTGATGGACGACTACACTGTGATTGGCAGAAACCTGTTTAAAAAGGAGACCAACCTTCAGCTATTTGTGGGATTAAAGGTCACACTTTCATCAGGAGAAACGGGGATCATCGAAGGCAGCTTTGGTCAGAGTGGGAAAATCAAAATTAGAGTGCCAGAGGGattaaaagaagaaacaaagCAGCTACTTTCCTCTTCctccaagaaaaaaggaaagggtGGGACTAAAAATGAACCAGCAAAAGAGGAAGAAGCCAAGATCAACTCTCAGCCAATCGCCATCCATCTGAACTTTAAAAGATATGTCTATGACCCCCATAAAAAGATGGTGCAGTCCTGACTTACAGGACTAACTGTTACAGAATAAGAGAAGGAAGCTGATGTTTAAGTAAAGTCTTGTTGGTTGTCTGAGGTATTGAGTGCATGGATGTCAAAGGGTTGTAAGAAGCTCTCTGGGGGTTTGGTTGCTTGGtttgtattctattttttgGCACAATTTTCTCGTGATAAAATGCTCAACCCTGGAAATAAAGACATCTGCATGTGAA

Function

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K03833 selB, EEFSEC; selenocysteine-specific elongation factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156580 lncRNA upstream 63716 35676178 ~ 35676841 (+) True G115915
TU156583 lncRNA upstream 64522 35642874 ~ 35676035 (+) False G115917
TU156600 lncRNA upstream 75680 35661443 ~ 35664877 (+) True G115925
TU156520 lncRNA upstream 191010 35535980 ~ 35549547 (+) True G115876
TU156517 lncRNA upstream 208536 35529492 ~ 35532021 (+) True G115874
TU156743 lncRNA downstream 115914 35862214 ~ 35862823 (+) True G116020
TU156763 lncRNA downstream 148647 35894947 ~ 35899393 (+) True LOC111193772
XR_002650716.1 lncRNA downstream 148686 35894986 ~ 35899081 (+) False LOC111193772
TU156773 lncRNA downstream 184624 35930924 ~ 35933206 (+) True G116050
TU156780 lncRNA downstream 212243 35958543 ~ 35967878 (+) False tomm6
XM_007254322.3 mRNA upstream 11025 35723719 ~ 35729532 (+) True rft1
XM_007254320.3 mRNA upstream 19129 35717968 ~ 35721428 (+) True sirt4
XM_022675732.1 mRNA upstream 22694 35709280 ~ 35717863 (+) True LOC103040678
XM_007254318.3 mRNA upstream 22694 35709280 ~ 35717863 (+) False LOC103040678
XM_022675727.1 mRNA upstream 31368 35690030 ~ 35709189 (+) False sfi1
XM_007254309.3 mRNA downstream 38742 35785042 ~ 35789366 (+) False rab7a
XM_007254310.3 mRNA downstream 38758 35785058 ~ 35789366 (+) True rab7a
XM_007254311.3 mRNA downstream 47119 35793419 ~ 35794515 (+) True LOC103038587
XM_007254312.3 mRNA downstream 49979 35796279 ~ 35801173 (+) True LOC103038900
XM_007254307.3 mRNA downstream 58794 35805094 ~ 35818581 (+) True LOC103037527
TU156628 other upstream 6198 35730653 ~ 35734359 (+) True G115931
TU156626 other upstream 6978 35730379 ~ 35733579 (+) False G115931
TU156625 other upstream 6978 35730653 ~ 35733579 (+) False G115931
TU156582 other upstream 64522 35674648 ~ 35676035 (+) True G115917
XR_002650712.1 other upstream 180831 35555962 ~ 35559726 (+) True LOC103045376
TU156853 other downstream 235819 35982119 ~ 35988060 (+) True G116103
trnaf-gaa_2 other downstream 502473 36248773 ~ 36248845 (+) True trnaf-gaa_2
XR_002650721.1 other downstream 911092 36657392 ~ 36713884 (+) False LOC103044253
TU157374 other downstream 1353714 37100014 ~ 37111598 (+) False LOC103045245
TU158023 other downstream 3612571 39358871 ~ 39359388 (+) True G116997

Expression Profile