RNA id: XM_022675727.1


Basic Information

Item Value
RNA id XM_022675727.1
length 3983
RNA type mRNA
GC content 0.47
exon number 32
gene id sfi1
representative False

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 35687626 ~ 35709189 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTACTTTGAAATCCACCAGCGGAAGTTGTTTCTACGCGGCAGTTACAGTTTGTTGTTGATGAGTAACTCAGAGGGATTATGCACACAACAGGACAACAATCTGGGAAACCAGGTTCTTTTGGGAAGAAGCAGAGGCAGCACACTTCCATCAGAAAGATCACATACCGGGTGGGATACACATGGAATAGAGGTGGACGACTTAAAGAGCTAAGGATACGACACCTTGCACGAAAGTTTCTTCGCCTCTGGATCCAGAAGACATTTGGAAGAGTCACTACATCACAAGCCAGATCTTACTATAGGAAGGTGATCTTGAAGAAGGTTCTCAGTGCTTGGAAAGATGAGTGGTGGTATGCCAGAAAAGAATGGACCTTAACTATTAGAGCAGACTGCCACTATAAttacgTCCAGTACAGTAAAGTATATCAAGCCTGGCGTGAATATGTATCAGACCAGAGTGAAGAGAAGAGGCGTCTCCAGATCGCCACCATCTTTATGGAGCGGCGTAGGTTGCGTGCTGTGTGGGACGGGTGGGAGCTGTATGTAGAGATGCGTCGATTAAAGCGCAGGATGCATGAGACCGCCATAAAGCACCAAAGACTTGCTACAGTTAGGCGGGTGTGGACGGTGTGGCAGGTTGCTGTACAGCAACGCTATGCACAATATCATCAAGAGGATCTAGCCATGCAGCACTGGGCTACCAATTTACAGAGCAGGTCATGGCAGCGGTGGAAGAGAAGATGCAGTGAGGCCTGTAGGCTAAGAGAAGAAGAGTCTAGAGCTCATCTTCATTACTCTCACAGACTCCAGAAATGTGTTTTACACAGCTGgatcacacacactgagcacagaCAAGCCAAAAATCAGACAAAAGCTATATCTGGAAATTTGTGGTGTCGCTCTGTGATCAGGAGGCACTGGGTTGTGTGGCGCAGGGCTTTGATGTGCAGACAGGCTGAGCGAGACAGAGGACAGATTGCAGACAGTCTGGCACAGCGTATCACTCAGCGCTGGGCTTTTTCTTGCTGGAGAGACTATATCCAGTTGTGCTCAGAGAAGGCTGACAAAAAACAGACTGCCCTACAACACCAGCAACTTCGACTGCAGCATGTGGGATTAAAAGGCTTGGCCTTGAATGTCACTCAGTGTAAAACTCATCGAACCAACAAGAACATTAGTGCCCAGCATCACCAGCACACAATGAAGAGGAAATATTGGAAGTTTTGGCAGGAGAGGTTGGAGATGATTGAAGAGAGGAGTTTTCAGCCACAGATGACCCAAGCACTGAACTATCACAGATTTTCAGTGTTGAAGATTTATCTTCAGAGATGGAGGCAACGCTGCAAAGAGCACAAACGCATGAAGGAGCTGCAGCTGCGAGCTGACTCTTGCTTTGCCAAGCGTGTTCTACCTCAGTCTATGGCCTCCTGGATTGAGTTTACAGAACAAAGAACAGATCAcaggaagaggagagagagagctgaactGTTTCACCAACATCAGGTGTACAGCTGGGCTTTTTATACCTGGTGGGGACGTTGTGTAGATCAGAGAGATCAGAGACTGGCAGAGAGGACGGCTGTGCTGCATGCTGAACAAGTGTGTGTGTCCCATGCCTGGTCCAAGTGGCTGTGTAGggttttacagcagagagaggACAGGCTGAAACAAGCACAGGCTCAgaaacttcacacacacactgttttgcGCAAGACTCTGCATCAGTGGAGTCAAAATGTCAAAGCTATACAGAACAGTCAGAGGCAGTTTGTGCAGGCCAAGGTTTATCATGACCAGAGGTGTATGCGAGGAGCTCTGAATTGCTGGCGTGAGTATGTAGCACACAGAAGACAGAGGACACAGCGATTGGCTCTGATTGATGAGCACTATGAAAGAAGATTGCTCAGAAACACCCTGCAGTCATGGAAGCAACATTATGTACAGACCCAGCAGATCAACCAGTGTGTGAATATCCGCTACCAGCAACATCAGCAGGATCTGGCAAGAAGGGTGCTATCTATATGGAGGAGAAATGTGCATCTGGCAgtagatgagagagagaaagagaggagagcgAACTGTCACTATCAACACTGCTTACTGTCAAAGGTGCTGTCAGCGTGGCATCAAAGGACAACACATATAATAGCTCATCATCACCAGCAGGAGGAAGCACTGAGAGAAGCTCAGCTTCACATGGACAAGGTGCGCATGCTGGCAGTTCTGAGGAGGTGGAAACAGCGACAGGTTGTGGTGAGAGAAGAAAGGCTGTCCCTAGAGAAGGCCTGTAGACATCACAGTTCTGTCCTGCTGAGACAATGCCTCACAGCCTGGATCATCAGTAATTTCAAGCATAAGAGCTATCAGGTTATGAAGAACAGGAGCAGAGAGCTGCACAGACTAAAAGTGTGCCGACATTTTTTTATCTGCTGGAAAGCACAGCTACAGAGCAGGAGAAGAGAAGCAGAGTTAACAGTGATGGCCCTTTGGCACTGGTCTCTGAACCTTCAGGCCAAGgtgctgtgtgtgtggagacACTGGGTTGCAGAGCGCCAGAGGAAACAGAGACGTCTAGCTGTAGCAGCTCAGGTCTACAGAGATGAACTGATGCGAGAGGGTGTCACCCACATCCTCACATATACAGCACACATGAACGCTTTCTCCTCAAACATGGCCCTGCACAGTCATGAGCAGAATTCTCGAAAGGTACAGGCAGTGGTGAGGAGGTGTGCCTTCCGCTGGAAGCAGCGAGCTTTATGTAAACCATCTGCCAGAGAGATGGCAAATAAAGAAGATAAACCTCTCAAAAAGAGTGTTTCCTTCTGCCTGCCTGAAGAACATTCTCAGGAAAACACCTGTGATCTCACATCCCCCCAAGACCACCGCCCAGTCCACTACCAAAGAGCTGAGCAGAGGGCTGGAGAGAGCATAATGAACAAATTGCTGCAGGTTCGAGCTTCTAGGTTGCAACCACGAAGGGCTGATGATCTGTTACACTCTCCAGTTAAAGAAGTGATGCCGCTCCGCCGGCCTAGAAGCATTCCTTCAGCACCCTCTACCCAGCTACAGCCTCCTGTTTCACTTCCTTACATCCCACCTCAGCTTCCTGTCCTGACTGTTAAACCTCCAGTCCCAGACCTCAGGCCTCGTTCTGCAGGAAACACTACTATGCTGTCCAGCAATGAAAGACAGGGGGAACTGCTCCCTCCTTCTTCATTTACTGCATCCAAAACACAGATCAGGGAGAACCCTGCACAGAATAAGATGGAGTCGACAAGTCCAAGGCACAAAGATCCCACACTCCTTACTCCACTCGATTTCATTCCCCATAAGTTACCTGGTCAAAGTATGTGTGAGAGACTTCTTGTGCATGATGATAAagaggatgatgaagatgaaATGAGCGTGATTATTCAGAAAACCAGTGACCCAGCTGAAGCTCTGACCAAAGAACTACTTGATATCAGGCTGGACCTGCAGAGATACCAGCAAGACAGAAATCAGCTGCAGACATGGCGTAAGCTTCAAAAGGTCATGAGGAATTGGCTGCAGACAACAGGCAGTGAAGAAGAAACTGAGGAAAGGGAGAGCATCATAGAAGAATTAAATGAGcTGGAGAGCCGTATTTCTGCTCTGTCTGTGAAACTGACTGAACAAAAGCCCACCATGATTTGCCACGCTGCAAGGGTCAACAGCATAGAAAGCCAGTTGCTGGAATGAAACAGTAAAGCATAGAAATGATGCATGTTTGCTATGCAAATTTAGAAACAATCTTGAACCTGTATTTGACCTCATGATTATTAAAGCTGTATACCTTCTGATCCGCATTATGTTAAGAATATTCTAGGGGTTGTGTGTATATAGCCATTGAATCTCTCAGGAATATAAGTGGTGTTTTGTAGAATTCTATATTTTGTGTCCATTTtccacttttttgttgttggttatttatttataataaaaaaaggattgttataaatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156580 lncRNA upstream 13189 35676178 ~ 35676841 (+) True G115915
TU156583 lncRNA upstream 13995 35642874 ~ 35676035 (+) False G115917
TU156600 lncRNA upstream 25153 35661443 ~ 35664877 (+) True G115925
TU156520 lncRNA upstream 140483 35535980 ~ 35549547 (+) True G115876
TU156517 lncRNA upstream 158009 35529492 ~ 35532021 (+) True G115874
TU156743 lncRNA downstream 153025 35862214 ~ 35862823 (+) True G116020
TU156763 lncRNA downstream 185758 35894947 ~ 35899393 (+) True LOC111193772
XR_002650716.1 lncRNA downstream 185797 35894986 ~ 35899081 (+) False LOC111193772
TU156773 lncRNA downstream 221735 35930924 ~ 35933206 (+) True G116050
TU156780 lncRNA downstream 249354 35958543 ~ 35967878 (+) False tomm6
XM_015607117.2 mRNA upstream 28905 35648837 ~ 35661125 (+) True LOC103043339
XM_007254329.3 mRNA upstream 28905 35651335 ~ 35661125 (+) False LOC103043339
XM_007254333.3 mRNA upstream 64822 35621652 ~ 35625208 (+) True hdhd3
XM_015607115.2 mRNA upstream 64822 35621705 ~ 35625208 (+) False hdhd3
XM_022675725.1 mRNA upstream 69957 35616324 ~ 35620073 (+) True trub2
XM_022675732.1 mRNA downstream 91 35709280 ~ 35717863 (+) True LOC103040678
XM_007254318.3 mRNA downstream 91 35709280 ~ 35717863 (+) False LOC103040678
XM_007254320.3 mRNA downstream 8779 35717968 ~ 35721428 (+) True sirt4
XM_007254322.3 mRNA downstream 14530 35723719 ~ 35729532 (+) True rft1
XM_007254315.3 mRNA downstream 31368 35740557 ~ 35746300 (+) True eefsec
TU156582 other upstream 13995 35674648 ~ 35676035 (+) True G115917
XR_002650712.1 other upstream 130304 35555962 ~ 35559726 (+) True LOC103045376
XR_002650711.1 other upstream 130304 35555979 ~ 35559726 (+) False LOC103045376
XR_002650708.1 other upstream 613404 35057150 ~ 35076626 (+) False LOC111193767
TU156333 other upstream 681088 34920701 ~ 35008942 (+) True G115736
TU156626 other downstream 21190 35730379 ~ 35733579 (+) False G115931
TU156625 other downstream 21464 35730653 ~ 35733579 (+) False G115931
TU156628 other downstream 21464 35730653 ~ 35734359 (+) True G115931
TU156853 other downstream 272930 35982119 ~ 35988060 (+) True G116103
trnaf-gaa_2 other downstream 539584 36248773 ~ 36248845 (+) True trnaf-gaa_2

Expression Profile