RNA id: XM_007254336.3


Basic Information

Item Value
RNA id XM_007254336.3
length 1009
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC103045376
representative False

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 35553601 ~ 35559726 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCCTATCAGCTGACCCAACTATATGCAAATTAagtgagctagctagcattcTAGCCAGCCTGTTCTAGAGGTGCGTGTTTAGCTGCGGTTTGCTGCACAACAGACCTGCGTCTAGAGGGAAAACCGAaattGTATTTCTGTGAAGCTGAGATTCCTTAAGGCTACACATCGGAAATGGGAGATCCTTCCCTAAGTCGAGACTGCCCAATAGACTGTAAGGTTTATGTGGGTAATCTAGGCAACAGTGGGGATAAGACTGAGCTGGAGAGGGCTTTTGGCTATTATGGCCCTTTGCGAAGTGTGTGGGTGGCTAGGAACCCTCCTGGTTTTGCGTTTGTGGAGTTCGAGGACCACAGAGATGCTGCAGATGCTGTCCGGGAGTTGGATGGAAGGACCCTTTGTGGATGTCGTGTGCGAGTTGAGATGTCTAGTGGAGAGAAACGGTCAAGGAATCGTGGACCGCCACCCTCTTGGGGTCGACGCCCGAGAGATGACTACAGGCGCCGGAGCCCACCCCCTAGACGCAGATCACCCAGGAGGAGGAGTTTTAGCCGCAGTCGCAGCAGGTCTTTTTCCAGAGAAAGGAGAAGGGACAGGTCTCTGTCTCGAGATAGAAATCACAAACCTTCAAGATCTTTCTCAAGATCACAAAGTCGTTCCCGTTCTAACGACCGGAGGTAAGATGCCTCTGAAGTCTGACTTTTGGAAAAGTTGGTTGTGTCCTTCAGACAAAGGCCACTGATTATGGATgtctgttctttttcttcttaaacAAGATTGGGCCTTTTTAGTATGTTATTTTTGGTTTTCCATCACATcgtacccttttttttttttttttccccttgttGACTGATGGCAAATTTCAAtgtcgttttttttctttctttcatctttTAAACAAAGTAAAGTTCTGTAGATGGCCATAACTCCTAAATTAGGTGTAAAACCTGGCTGAACTTTAGTCTCTTCTGTTTTTCccttctttttaataaaatgatgaaaatgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156520 lncRNA upstream 6413 35535980 ~ 35549547 (+) True G115876
TU156517 lncRNA upstream 23939 35529492 ~ 35532021 (+) True G115874
TU156516 lncRNA upstream 29450 35525409 ~ 35526510 (+) True G115873
XR_002650710.1 lncRNA upstream 30871 35524334 ~ 35525089 (+) True LOC111193769
TU156583 lncRNA downstream 83148 35642874 ~ 35676035 (+) False G115917
TU156600 lncRNA downstream 101717 35661443 ~ 35664877 (+) True G115925
TU156580 lncRNA downstream 116452 35676178 ~ 35676841 (+) True G115915
TU156743 lncRNA downstream 302488 35862214 ~ 35862823 (+) True G116020
TU156763 lncRNA downstream 335221 35894947 ~ 35899393 (+) True LOC111193772
XM_007254347.3 mRNA upstream 32045 35503056 ~ 35523915 (+) False LOC103021651
XM_022675721.1 mRNA upstream 32045 35511341 ~ 35523915 (+) True LOC103021651
XM_007254349.3 mRNA upstream 84755 35462800 ~ 35471205 (+) True LOC103022280
XM_022675719.1 mRNA upstream 234901 35309647 ~ 35321059 (+) False LOC103023619
XM_015607130.2 mRNA downstream 22697 35582423 ~ 35594235 (+) True LOC103046487
XM_022675725.1 mRNA downstream 56598 35616324 ~ 35620073 (+) True trub2
XM_007254333.3 mRNA downstream 61926 35621652 ~ 35625208 (+) True hdhd3
XM_015607115.2 mRNA downstream 61979 35621705 ~ 35625208 (+) False hdhd3
XM_015607117.2 mRNA downstream 89111 35648837 ~ 35661125 (+) True LOC103043339
XR_002650708.1 other upstream 479334 35057150 ~ 35076626 (+) False LOC111193767
TU156333 other upstream 547018 34920701 ~ 35008942 (+) True G115736
trnaf-gaa_1 other upstream 1128420 34427468 ~ 34427540 (+) True trnaf-gaa_1
TU156151 other upstream 1164001 34380304 ~ 34391959 (+) False LOC103038162
XR_001518742.2 other upstream 1217043 34330998 ~ 34338917 (+) False rbm38
TU156582 other downstream 114922 35674648 ~ 35676035 (+) True G115917
TU156626 other downstream 170653 35730379 ~ 35733579 (+) False G115931
TU156625 other downstream 170927 35730653 ~ 35733579 (+) False G115931
TU156628 other downstream 170927 35730653 ~ 35734359 (+) True G115931
TU156853 other downstream 422393 35982119 ~ 35988060 (+) True G116103

Expression Profile