RNA id: XM_007258359.3


Basic Information

Item Value
RNA id XM_007258359.3
length 3204
RNA type mRNA
GC content 0.47
exon number 10
gene id uhmk1
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 40619482 ~ 40636689 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TACATATTTGTATTTCCAAATTTAAAGGAATATAACGGACATGTAGTTAGACAGTATTTAAAAGTTGTGGTTTTAGCCGATTAGCTGTATTAACCCCATTCACTGAGGTCTCTCTCgagggctccctctagcggttggCGGTAATTATCTAGTACAGTGTAACAGGGGGGAATGGGGAGTGGGCGGGCTCTCTGTAAACTGGCTCTAGTAGTCTGAGTGTAAGCCTTTACTTCACTTCCGCTGCAATGGCCGCCAAAACAATGGCCGGAATTTTAAGTTTTTCAGCTCGTGAAAATAAGTTTATTCAGCAGCTTTACGtttgaaaataaatttatttcGCCTCTGGGTTTTTCTTACAGTAACCTTTAGTGCTAGGTATGCCGTGAGAGGTCAGACTGCGTGTGGCGGCGCTGTTTAAACCCCTGCTGCAGCTTTCCTGCTCCCTCAGAGTTGAAGCTAAGATAGCTAAAAACAGTCAGCTGATCCAGATTACTGACCCCTTACTTAACACTTAGCTTTTTAACTAACCCGCTAGACTGCCTAATACTTTAGTTGTATCAAACTAATGGGAACAGCAGTCCTTAACACCCGCATACTGAGCCGGTGTTAGTGTTAGTAAGCGgactgaattattattatgcaGTAGGTTCAGCAGCAGCGCAGCCGCTTCTTTCCTCTCGGACTGAAATGAACACCTAGCCGCTCCGTTAACTATGGCCTGTAGTTCAGGAACCAGCCCCGTTGGCACCGCGCAGCCGCCGCCGCAGCTCCCCGTAGCTTCGCCCTCGGCTGAGGCCATGAAGCCGGTTCTCTTTGAGATATTCGGGGAGATGTGGAAGGTCCAGGCCCGCCTGGGTCAGGGAGGCTCTGCCTCAGTGTACCGGGTCAGCTCGGTCAGTACGGGCAGAGCCAGCTCGGCCGCAGTGAAGGAGTTCCAGGCGGACGCACAGGGAGGGGATTACGGGTATCTGAAGGAAAGAGCCGTGCTGGAGGAGATCCAGGGACACAAGAATATCGTGACCCTATATGGTGTGTTCACCCATCACAACCCTCTGGGCATAGCCACACGATGCTTGCTGCTGGAACTTCTTGACGTCAGTGTTTCAGAATTGCTGGTCCGAGCAAGCAACCAGGGTCACTCCATGTGGCTGATCCAGCACTGTGCCCGTGATGTACTGGAGGCCTTGTGCTTCCTGCACCGAGAGGGCTATGTGCACGCTGACCTGAAGCCCCGCAACATACTCTGGAGTTCTGATGACGAATGCTTTAAGCTCATTGACTTCGGGCTCAGCTTCAAAGAGGGACACCAGGACGTGAAGTACATCCAGACTGATGGATATCGGGCTCCTGAAGCAGAGCTGCAGAATTCGCTGGCACAGGCAGGTCTAGAAGGAGACTCGGGCTGCACTACTGCTGTTGACATGTGGAGTCTGGGCATTATTCTGCTGGAAATGTTCTCAGGAATTAAACTGAAAGAAACTGTCAAGTCTCAGGAGTGGAAGGACAACAGTGCTGCAATTGTAGACCATATCTTTTCAAGCAATTCAGCGGTGTACCCTGCTATCCCTGTCTATCATCTGAGAGATCTGATCAAAAGCATGCTTCACAACAACCCAAGCCGCAGAAGCACTGCTGAAGCTGCACTGATCAATCCATTCTTCAGTATTCCTTTTGCACCTCACATTGAAGACTTGGTTCTCCTACCGACACCTGTCCTCAGACTACTCAACGTAATTGATGACTGTCATTTACACAATGATGATGAATATGAAGAAATTATTGAAGACATGAGGGAAGAATGCCAGAAATATGGCTCTGTCATATCCCTGTTGATTCCAAAAGAAAATCCTGGCAAAGGCCAGGTGTTTGTAGAGTATGCAAATGCTGGAGACTCCAAAGAAGCCCAGAGGCTGCTGACGGGCCGAACATTTGATGGCAAATTTGTGGTGGCCACTTTCTACCCACTGAGTGCCTATAAAAGAGGGTATCTGTATCAAACTGTGCAGGGAACTCAACACGGCACCATGTTCCATTTTATCTACTGGAAAGGGCGCTCTGTGGGACAACACTCTTTAGAAGGGGTGACAAAGAGAGCAATTCATAACAGCACCCGTCCTCTACTGAAAGGACAGCAGGACACCCATAGAAGGTTCACTACAGACGGAGAATGCAGTCCAGACCCTCCCCTGTAGAGCGTCTATATTACTGGCCTCCTGTAGTTCCTCTGTAGAGCTACATACATGCCTCCTGTTTATGGCCCCACATTTTACAGCTGGTCTAATAAAAGAAGCTGAGAGTGTCTGGTCTATTTGCGGGCGTACAATCACTCTCCACATCTGCACTTGAAGCGAATGAATGACAAAAGGAAAGGGATCACTAGCTGTTTCACCGTGGCAGCTCGAATGCCATAAATATTCACTGGAGAAAATGGCACGGCTCTATGCAGAATTCAGGAGATAGATCTTGCTACTGCATTACTTGGCAACCCTCTGTTCTTGCCTCAGACTCAGGCATGACTGCACAAACCCGTCTGTGCTGGAATTGTGTACACAAGCTGAAACGgccgcagagagagagagaggaatgcaGGATCCGTTTTGGGTCAGGTGTTGCCTGTTGATCACCTGAGTACCTATTCACTCCTCGCTTCATGCTCGCTGCACCTGGTCAATACCTCGGGTTCAAACTCTGAGGCTACACCTGTGGATTATCATGCATCTGAACAGCCACCTGCTGAAGCTGCACTGAACGTGTCTCCTCACACACCAGCCACCCATTTTTTTACAGCTGTTTTCTTGTAGATTATGGCGAGCAAGCAAACAATCTGCACGAACGTACGCTGTCAGGATCAAGAATTCAAGGCTGAGCTGAATATCGATGAACAACAATTTCAGAAAGTGCTTGTTCTGACAGGCAGCGAATATGTGGAGTCTTGGCAtctgcattaaaaataaatcgCACTCATATATTCAAGCATTgccccctttttttttaccaagagtTTAAACGGAGTTCTGTTATATTAACTGcagtgtataatgtataattaaaattcGAGGACGTCTATGCTCAAGAGATTCGCTGCACAAATGATGTATTATTAATGCTAAATGATCATGTGATGTCAGCTcagaatgcttttttttttataagaaatgttgtgtttttgtgttcatTCTTttctaatgaataaaaatagcctgc

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
K08877 UHMK1, KIS; serine/threonine-protein kinase Kist

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158336 lncRNA downstream 5066 40614199 ~ 40614416 (-) True G117235
TU158333 lncRNA downstream 19221 40595052 ~ 40600261 (-) True G117232
TU158317 lncRNA downstream 107243 40418271 ~ 40512239 (-) True G117217
TU158303 lncRNA downstream 279004 40337761 ~ 40340478 (-) True G117207
TU158304 lncRNA downstream 279004 40337761 ~ 40340478 (-) False G117207
TU158341 lncRNA upstream 6260 40642948 ~ 40650103 (-) True G117239
TU158346 lncRNA upstream 16363 40653051 ~ 40653775 (-) True G117240
TU158362 lncRNA upstream 71094 40707782 ~ 40709792 (-) True G117253
XR_002650726.1 lncRNA upstream 81168 40717856 ~ 40721125 (-) True LOC111193788
TU158370 lncRNA upstream 94608 40731296 ~ 40769682 (-) False LOC103034527
XM_007258374.3 mRNA downstream 255522 40360319 ~ 40363960 (-) True LOC103040080
XM_007249063.3 mRNA downstream 1328454 39284217 ~ 39291028 (-) True LOC103028549
XM_022675823.1 mRNA downstream 1336567 39271790 ~ 39282915 (-) True LOC111193786
XM_022675821.1 mRNA downstream 1594320 39013762 ~ 39025162 (-) False lnp1
XM_007258353.3 mRNA upstream 94915 40731603 ~ 40749302 (-) True LOC103034527
XM_022675127.1 mRNA upstream 118660 40755348 ~ 40777657 (-) True LOC103034848
XM_022675837.1 mRNA upstream 180103 40816791 ~ 41017814 (-) True LOC103041916
XM_007258347.3 mRNA upstream 588153 41224841 ~ 41249611 (-) True LOC103032504
XM_022675838.1 mRNA upstream 614329 41251017 ~ 41260579 (-) False c13h1orf210
XR_002650725.1 other downstream 255522 40360401 ~ 40363960 (-) False LOC103040080
TU157786 other downstream 2234884 38381270 ~ 38384598 (-) True G116805
trnaq-uug_2 other downstream 3526412 37092999 ~ 37093070 (-) True trnaq-uug_2
TU157486 other downstream 3573694 37041361 ~ 37045788 (-) True G116581
XR_001518677.2 other downstream 3588122 37023391 ~ 37031360 (-) False LOC103023810
XR_002650728.1 other upstream 945145 41581833 ~ 41582017 (-) True LOC111193790

Expression Profile