RNA id: XM_007258374.3


Basic Information

Item Value
RNA id XM_007258374.3
length 1725
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC103040080
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 40360319 ~ 40363960 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GATAGAGGAGGAGGCTGCACTAAGACTGTGAGGATCCTCTGTTCGAGCGACGTTAAACGCTTCTCTTTCTCTTGGTTGGATTTTTCTCACTCACTGCCAGCATGTGTAAGGGACTGGCTGCACTACCTGCGACCTGCCTGAAAAGCGCTAAAGACATAAAGCACAAGATCGGCTTCTTGCTTCAGAAACCTGAACCGGTTCAGGAGCAAAAGCTCGcgaaggaaaaagaaaaggagaaggCAACTGTGGTGAAAAGCATCGCTCCTGTTGAAGCTGAGAAATGGAAGACATCATTTAACAACTTGATTAAAAATGATGtTGGACGGGCCGCATTTACAGCCTTTTTGAAGTCGGAGTTCAGCCAGGAGAACATTGAGTTCTGGGAGGCTTGTGAGGACTTCAAGAGGACGCCTGCAAAACAGATGGAAGCCAAAGCCAAACAGATCTTTGAGCACTATGTCAGTGTCGACTCGCCAAAAGAGGTCAACCTGGACTCAGCAACAAGAGAAGAAACCAGGAGCAATCTGGAAAAGATTGACGCTAGCTGTTTTGAAGAAGCCCAAAACAAGATTTTCACACTGATGGAAAACGATTCGTACCGGCGCTTTCTGAGATCCAAATTGTTCCTTGACCTGTGCCATTCTCCCACAGATAAAAAGCCCTGCGGCCTGGAGAGAAAAGGCAACCTTCCCGAGTTCAGTCCGTTCCTCCTGCCTCACTGCGCTTAAGCTACGGTATCTACATATCTGAGAACCTGAGAAGAAAAGCTCCCTCTCAAGCTGACATTGGTGGACTAATTTCACTTCTTTGAGAAACAAAAAGCTGTTAGAGGCTTAAGCCAGCGCTTAACGAGCTCCATGACATACGAAGCAGACGCAATGGATGAAGATGCTCATTGATTGTTTTCTCAGCTGTGCTTTCTGGCTTTAAGTATTTTCACAGTTTGAGCAAATAATTCACTTCTGTTTCTCATCTTTACTGTTGTTGCAAGCaattttcaggtcattttacaATCAATAGGAAATAACACACTAAACAGCAAGATGAATAAGACACCTTCTAAAGCCCATCAGATATCAAAGTGGAAATACTATGAATAACCATGACTGAGTTTACAAACGAGTGACTGTTACAGATTGGAGAAAAGCAGGCGAGTGCAGTATCTGTGTTTAATCGATTTCATATGCGTTTCAGGCTTTCTGTGAGTGGAAGGACTGTGGTACACACAGTAAAAATACCACTGTTAAATCAACACCATTACACTAATAGTATTGATTTAACACTGAGCAGTGCTAAAGAAGGAACCCGtctaatacacacatatacacacaaagacacacacgcatcaacttcattttttttttcttttttatttttgatatagtGAGTTGACACATGCTAGTACATTTATTAAGAGTTGGGCATTTTCaaatgagcagaaaaaaaaaaaaaaaaaacatctggtcATTATAAATAAACCCTAAAGCAAAACGAATGTTATCTGTAAAGCTGTACTTACGCAATGTGATCCCGTCAGCTCGTCCTGCAGTGCTGTGAATCCTGTTAATGTTAATTCTGTCCTTCTCTTGTAATGTCACTTTCTTCATCTTTACTTATAAGAATAAATGGTTGTTTATATGCCGTTTACAGACTTGTTTACTGATACGTGTTAcacatatttattgtaatatttatgaataaaagaaaaaatgtctCACTCAAAAA

Function

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0031018 endocrine pancreas development biological_process
GO:0007626 locomotory behavior biological_process
GO:0007409 axonogenesis biological_process
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG:

id description
K16449 RGS; regulator of G-protein signaling

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158303 lncRNA downstream 19841 40337761 ~ 40340478 (-) True G117207
TU158304 lncRNA downstream 19841 40337761 ~ 40340478 (-) False G117207
TU158169 lncRNA downstream 190114 40169837 ~ 40170205 (-) True G117120
TU158164 lncRNA downstream 223633 40129216 ~ 40136686 (-) True G117115
TU158155 lncRNA downstream 288402 40071596 ~ 40071917 (-) True G117107
TU158317 lncRNA upstream 54311 40418271 ~ 40512239 (-) True G117217
TU158333 lncRNA upstream 231092 40595052 ~ 40600261 (-) True G117232
TU158336 lncRNA upstream 250239 40614199 ~ 40614416 (-) True G117235
TU158323 lncRNA upstream 260377 40624337 ~ 40626142 (-) True G117223
TU158341 lncRNA upstream 278988 40642948 ~ 40650103 (-) True G117239
XM_007249063.3 mRNA downstream 1069291 39284217 ~ 39291028 (-) True LOC103028549
XM_022675823.1 mRNA downstream 1077404 39271790 ~ 39282915 (-) True LOC111193786
XM_022675821.1 mRNA downstream 1335157 39013762 ~ 39025162 (-) False lnp1
XM_007249071.2 mRNA downstream 1335158 39013759 ~ 39025161 (-) False lnp1
XM_007258359.3 mRNA upstream 255522 40619482 ~ 40636688 (-) True uhmk1
XM_022675829.1 mRNA upstream 255522 40619482 ~ 40636685 (-) False uhmk1
XM_022675830.1 mRNA upstream 255522 40619482 ~ 40636684 (-) False uhmk1
XM_007258358.3 mRNA upstream 258193 40622153 ~ 40636689 (-) False uhmk1
XM_007258353.3 mRNA upstream 367643 40731603 ~ 40749302 (-) True LOC103034527
TU157786 other downstream 1975721 38381270 ~ 38384598 (-) True G116805
trnaq-uug_2 other downstream 3267249 37092999 ~ 37093070 (-) True trnaq-uug_2
TU157486 other downstream 3314531 37041361 ~ 37045788 (-) True G116581
XR_001518677.2 other downstream 3328959 37023391 ~ 37031360 (-) False LOC103023810
TU156955 other downstream 4298390 36056563 ~ 36061929 (-) True LOC103028059
XR_002650728.1 other upstream 1217873 41581833 ~ 41582017 (-) True LOC111193790

Expression Profile