RNA id: XM_007258375.3


Basic Information

Item Value
RNA id XM_007258375.3
length 2417
RNA type mRNA
GC content 0.40
exon number 5
gene id LOC103040381
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 40318758 ~ 40339674 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAAAGTCATCCCCATATAACAGCGCAGAGCCGGGAGACAAATTCAAAAGGAAAGCGGAGACAGGAACTCATGGTTGTGGAGTAACTCTGAGCACGAATACTAAAAGAGtctgaaaaatgtgtaaaggaTTAGCTGCCCTTCCTCAGACATGTCTGGAAAGGGCTAAAGAGATCAAGACTAAGTTGGGAACTCTGCTGCAGAAGCCAGAGAATGCCATTGACCTCATCATCCCCTACCCCGAGAAGCCTGAGAAGAAACCAGAAAAACTCCAGAAGCCGACCCCCGAAGAGGCTTCTCAGTGGCGTGAGTCTCTGGACCGAGTGCTCAACAACAGCTATGGTCTGGCTACATTCCGTGGCTTCCTGAGGTCCGAGTTCAGTGAGGAGAACATCGAGTTCTGGGCAGCTTGTGAGGATTACAAGAAGACCAAGTCCCCCCTGAAAATGGCCACCAAGGCCAAGAAGATTTATGAGGACTTCATCCAAACTGGTGGACCTAAAGAGGTGAACATTGACCACTTTACCAAAGACGTGACCCTGAGGAACCTGGTGGATCTCAGCCCAACCACCTTCGATTTGGCCCAAAGCCGCATCTACACCCTGATGGAGAAAGACTCCTTTGGTCGCTTTCTCAGATCTGAGCAATACCAAGAACTGATCAAGTAAACGGGGTCATTCAGCTGCAGGGAGACAAAACAGACCAACCAGCATCAATCGATGTTTAATCTATGTAGCTCCCAGCACCTCATTTACGGGCCTCAGGCAACTAAAGTCCTTTATATGAAGCGATTGTGTAAAAACATGACAATCTGTTAGAAAGATTTGAAAGATattgaaattggaaaaaaatacaaaaaatcgAGTCTCCCTGCAGCTCTCTATTCCCTTGCTAATAACTGTCTTTTTCATAATCATAACTACTTTATGATGACTGAAAAAAGGCAATTCTACTATTAGTCATTAATCAAAAacatgtgatgatgatgaaccATGCAAATAAGCTAATAGAGGATGCTATTAATTGGGTACAGTTTGGAATGCACAGTCTGTTAATTAGAATGATATTCTTCTCTATTTTTCCCTTCAAGACTAaataaaagaggagaaaaacataGCCAGACTGATCCCCTCTTGTAATCCGTGCTTTTTCTTGGAAATACGACAAGTGGCTCATGTTTTTCAAGAGGGTAATCTGACCTCTAAGGTGCAATTAGTAGAAGTTTCTGAGCAGCGAGTTCATGGACTGCTTGGAGAGTAGAAACAGGACAGTGTGGGGAGGGGGAAGCTAACGGcgagggcttttttttttcctggaaaCGTCCACACAAATATTAACAGTCATATGGTATAGCACAGTgaaggggtggggggtgggagGTAGGGGTTTGGGAAGGGGGGGCTGGTTTGTGTCGCCATTAATCTTGAAAGGCCCACCATCAGTCAcagtaagagaaagaaagaaagagacgtGTTTAAATGCACTGGGTCCCTGGGAAATGCCAGAGAGGAGGCTTGTTGCAATATAACAGCTACATTGTAAGTTGCTAAGATGGGAATATCAAGTAGGAGTGGATCTTCATAAAGCTTTGGAAAACAGTGTCTTCTTCAGCCAGAGGGACAGCTTTCCCAAGGGATGTCAAACGCAAATTTTCTCCAACCGTTTGTTTGGATTTCagtggaaaagaaaagaaaaaaaaacatccctaaGGCCCCCCTGATGAGTACATCCAATAATTATCACCACTTAAAAGAATTAGCCCAGAGTTTATATACAAATTATacaaatctgaaacatttactCTGCAATTATAAAGgcgtaattataataataacagactAAAAGCATTTACCAGCATGAGTAAGTATGCTAAGATATACAGTGTAATTTCCATTAAATTATTGCATGCCCTTATGCTGCTCTTAAGCAGctcatttactttaaaacagAACACAGACATGTTGACATCATCatattatattgtgtgtatTAGTAATAAGCCCTAaaattatttcctttttttttttttcctatattaATGGATGTGTTTGACCCCAACACAATAACGATAACGATCACCATTCAAAAAGAATTAGCATGAGTTTATGCACAAATTATACAAAACATATTTGAAACATTTACTGTgcaattatattacaatattatatgaCACTAAAAACGTAAAGCATTGTACCAGCATGAGTGTATGTTACCATCTACAATTTCCATTCAAATATTGCATGCTCTTATGCTGCTCCTAAGCAGTTCCTTTACTTTAAAACAGTCCTGAGACTTTTCATGTTGTCTTAAACATGATTTAATTACGTTGTGTTGTGTATTAGTAATATGCCCTAAAGTGATTTCCCTAAAATGATatattaaagtgtgtgtttgtgatcccaccacatacatatatacta

Function

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG:

id description
K16449 RGS; regulator of G-protein signaling

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158160 lncRNA upstream 182031 40129092 ~ 40136727 (+) True G117111
TU158156 lncRNA upstream 226914 40091595 ~ 40091844 (+) True G117108
TU158150 lncRNA upstream 281227 40037300 ~ 40037531 (+) True G117102
TU158107 lncRNA upstream 470923 39839012 ~ 39847835 (+) True G117071
TU158056 lncRNA upstream 820400 39497799 ~ 39498358 (+) True G117025
TU158199 lncRNA downstream 20666 40360340 ~ 40362577 (+) True G117147
TU158215 lncRNA downstream 227534 40567208 ~ 40580304 (+) True G117152
TU158217 lncRNA downstream 279894 40619568 ~ 40620766 (+) True G117154
TU158225 lncRNA downstream 284336 40624010 ~ 40626108 (+) False G117156
TU158220 lncRNA downstream 284658 40624332 ~ 40626108 (+) False G117156
XM_007258376.3 mRNA upstream 42269 40273386 ~ 40276489 (+) True LOC103040699
XM_022675826.1 mRNA upstream 59539 40224051 ~ 40259219 (+) True LOC103027818
XM_007249062.3 mRNA upstream 309222 39954473 ~ 40009536 (+) True LOC103028032
XM_022675824.1 mRNA upstream 724735 39517500 ~ 39594023 (+) True LOC103022251
XM_007249064.3 mRNA upstream 1106935 39209814 ~ 39211823 (+) True hes1
XM_007258372.2 mRNA downstream 77653 40417327 ~ 40567138 (+) True nos1ap
XM_007258373.2 mRNA downstream 77653 40417327 ~ 40567138 (+) False nos1ap
XM_022675827.1 mRNA downstream 240702 40580376 ~ 40600295 (+) True c13h1orf226
XM_007258362.3 mRNA downstream 298111 40637785 ~ 40653811 (+) True uap1
XM_007258364.3 mRNA downstream 298111 40637785 ~ 40653811 (+) False uap1
TU158023 other upstream 959370 39358871 ~ 39359388 (+) True G116997
TU157374 other upstream 3207160 37100014 ~ 37111598 (+) False LOC103045245
XR_002650721.1 other upstream 3604874 36657392 ~ 36713884 (+) False LOC103044253
trnaf-gaa_2 other upstream 4069913 36248773 ~ 36248845 (+) True trnaf-gaa_2
TU156853 other upstream 4330698 35982119 ~ 35988060 (+) True G116103
TU158258 other downstream 459797 40799471 ~ 40803543 (+) False LOC103033994
TU158255 other downstream 459897 40799571 ~ 40803543 (+) False LOC103033994
TU158846 other downstream 2012133 42351807 ~ 42355784 (+) True G117642
TU158848 other downstream 2012133 42351807 ~ 42355784 (+) False G117642

Expression Profile