RNA id: XM_022675839.1


Basic Information

Item Value
RNA id XM_022675839.1
length 2206
RNA type mRNA
GC content 0.41
exon number 5
gene id c13h1orf210
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 41251017 ~ 41260579 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGATGGcatcatatctctctctctctttgctgaTGTTGCTCATAGTGTGTTAACTACAAACACGTTGGGCTCCATTAACCCCTATGAGTCTTTATGTTGTCTTTTTAAACCACCACAATAAAcacaaggtaggtaggtaggctgTACTATGTCACTTTAACTACAGACATAAGGAAGTTGGGCTAACACACTGCTGGATTTACGAATAAAAGGTTAGGAATTTTGTTTCTGAATACACTGCAGTTGGGGAAAGGTGGGGAAAGGAAACAGCAGAGCATGGGGCCGGTAGCTCACACTCTGTGTGTGCTCATCACCCTCTGGGCCTCAGGTTTATGCCATACACTCCAAACTGTGGGCCCTTGTGTGGTCGACAGAGAGAAGACTGCGTTTGACTGCAGCAGACGAAAGCTCACATCAGTTCCAGAACAGATATGGAAGAACGTGACTGAGCTTGATCTCTCAGGGAATTACTTAAACCTAGCCCAAACCAAAGGTCTCAAGGAGCATCCAAGCTTTGACCATTTGATTACACTCAATCTTTCAGGAAACTACCTCCCCCTACTGGGGAAGAAGCACTTTTACCCTCTCCCATCTCTgcaaatactggatctcagtgGATGCAAGCTGGCTGCAGTTGAGACTGATGCCCTGTTGAGCTTCCCCAGCTTGAAAAAGCTATTTCTGGGCAATAATAACCTACAGACACCTCTACCTGCTGCACTACAAGACCATGGACAGATTGAGTTGGTAGATGTCACATACAAAGTTCATGGAACTATGGCCCAGGAAAGACACTCcaatgGACATGCTTTTAACATGATCATCCAAAGTAAGGTGCAACGGAAACTGCTGGCAGCAAACACAACAGGCAATGATACAGTCACTGACAACAATGGGCACAGTTCCTCAGGCGGGTGGAAACCCCTTGTTGCTGTTTTGGTGACAGCCATTGTTGTCTCCATCCTTATCGCTGTGGGTGCAAAATGTAAAGTTGTGCGCAAGTATTTGGCCAGCTATAGGCACTCAAGGCTGAGCGAAACGGACACAACCAGCCACTGCGACCCCGGTAGTTTTGAGGTGGGCTTCTCCACTCAGGGCCCCTCAGGCAGGGGACCACATGCAGTTCCTGCCGAAGGGGACGAGatggaggaggatgatgatgggTTTATTGAGGACAATTATATTCAGGCCAGTGAGAGGGAGCGAGCAGAAAGAGAGGTACACACATGGGAACACGAAGAAGACGAcgaagatgaagaagaggatGAGATAGAATTCACTATTGGATAGTTAAATGAGAAGTTTGTGAAGATTGGGCCACAACTAGTAGCAGCAACTTAACAACTTAgttttttggaagaaaatggAAACAGCAGTGGACTTTTTTTCATAaagattatttatgatttaatgATTCTCCTACTTTACATATATTACGTTTGTATGTACTGCTgtgttctctctcctctctctctatgatacaattaacttaacatttaatttaaaaataagtaaattggGTTTGAAGAGGAATTCCATGGaatatgtattgtgtttttcttgTATAAAATGGTTATGTTTGGTCATGTTACCTTAGAACAGCGGTTTTGATATGTGTTCTACTGGTGGTGCACAAAGCATTCCCAAGGTGGTACACTTAATGGCATCAGAAAATTCTCTGCATACACTACAACATTAACACATCACATTTGCACATGTGATTCAGTGAAATGATCAGTAGGTGCTACTTGAAAGTTTTAGTTTGATCCTGGTTGGTACATGACCTACAAACTTTGAGAACTACTGTATTCAAGGAGGTCAATGATTCCTGGTCCTTGTCATAAGCTATTTAGGCCTTCCCAACACACCATAACCAGCTGATGAAAAGCTGGAAtgtcaaaacatgaaaaaatgtgTAGGACTAGGTACTCCAGTTCCAGGACTGGGAATAAGTGTGTAATAGTAGccacttgttttttgtttttgcatattGTATTGTGCAGTttgtttatgttgtatttaacaTCTTTTAAAAGTACGATAtggcaaaaaatacaaattaaaatttaaaatgagtTAACCAGACCTCACTGTTAGCCATATGGCTTGATCAATTTGTAAAATTTCAAATGTCAGGCATAGACATGTAATAATGGCTTGATAAAGTTGTTTTaaccttaataaaataaaatttgtttttGTACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158426 lncRNA downstream 129969 41120752 ~ 41121048 (-) True G117305
TU158421 lncRNA downstream 159023 41091474 ~ 41091994 (-) True G117300
TU158379 lncRNA downstream 417515 40816133 ~ 40833502 (-) False LOC103041916
TU158398 lncRNA downstream 448591 40799599 ~ 40802426 (-) True G117278
TU158393 lncRNA downstream 453198 40795912 ~ 40797819 (-) True G117277
TU158508 lncRNA upstream 44567 41304537 ~ 41307461 (-) True G117357
TU158527 lncRNA upstream 83523 41343493 ~ 41347260 (-) True G117374
TU158541 lncRNA upstream 89527 41349497 ~ 41350906 (-) True G117381
TU158547 lncRNA upstream 93539 41353509 ~ 41354358 (-) False G117383
TU158548 lncRNA upstream 96752 41356722 ~ 41359883 (-) True G117383
XM_007258347.3 mRNA downstream 1406 41224841 ~ 41249611 (-) True LOC103032504
XM_022675837.1 mRNA downstream 233203 40816791 ~ 41017814 (-) True LOC103041916
XM_022675127.1 mRNA downstream 473360 40755348 ~ 40777657 (-) True LOC103034848
XM_007258353.3 mRNA downstream 501715 40731603 ~ 40749302 (-) True LOC103034527
XM_007258358.3 mRNA downstream 614328 40622153 ~ 40636689 (-) False uhmk1
XM_007258340.3 mRNA upstream 64752 41324722 ~ 41335529 (-) True orc1
XM_022675115.1 mRNA upstream 111066 41371036 ~ 41385641 (-) True tspan1
XM_022675850.1 mRNA upstream 620998 41880968 ~ 42081871 (-) False mast2
XM_022675849.1 mRNA upstream 620998 41880968 ~ 42081871 (-) False mast2
XM_022675848.1 mRNA upstream 620998 41880968 ~ 42081871 (-) False mast2
XR_002650725.1 other downstream 887057 40360401 ~ 40363960 (-) False LOC103040080
TU157786 other downstream 2866419 38381270 ~ 38384598 (-) True G116805
trnaq-uug_2 other downstream 4157947 37092999 ~ 37093070 (-) True trnaq-uug_2
TU157486 other downstream 4205229 37041361 ~ 37045788 (-) True G116581
XR_001518677.2 other downstream 4219657 37023391 ~ 37031360 (-) False LOC103023810
XR_002650728.1 other upstream 321863 41581833 ~ 41582017 (-) True LOC111193790

Expression Profile