RNA id: XM_022675127.1


Basic Information

Item Value
RNA id XM_022675127.1
length 4009
RNA type mRNA
GC content 0.42
exon number 17
gene id LOC103034848
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 40755348 ~ 40777657 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CATGGAGACGGGCTCGCCTGAGTCTCTGTACCGATACACCGGGGCCAGCGCACCGATACCGATACTGATACAAATAGAAGTGATGGACCACTCTGAGGaagattaaaatgtgtttacctGTGTACTTTGCACAGGAGAAGAGTAAAGAGTCTACAATACTAGGGGTTTCCCCACAGGCCCTTTGAAGCAAGGATGGGAGTTAAAAGTGAAAAGATCAGAAACGTGGAGTAGACTGGCTTGTGCGCCGTTAGGTTCACATGCTCTAAATGGGACGGAGACACATGAAGACATGGTATTAAATCTTAGAAGGTTGTGAAGTTATTAACTGTATCCTTCCACAAAATCTGTCTGAGGAACTTTGAGGAACCTTCAAGAAAGCTTAAGCGATAAACCTAGATGCGATCGATTACTGAGTACACGTCCGGGGCTCTCTACATTAACAACGTGTGAGATAATCGTTTCATCAGGGAAGGAAGAAGAGCAAAGAAATGATAAGATGCTGTGGTGATGACCTCTATGTGAACGGTTAAACAGTTCTAAGAGAAGCAAGAGAGCGAGGAGATAAGGAGAAACACTTCATATACAATGTCATTTATCAAAGAGACCAAGAGAAGCCTGACATGGATTTTAGCAGAGAAGTCATGCAGATTGTCTTTCTTGTTCTGCTCTTCTGTAGATTGACAGACTGCTATAGCGTCATCTGTGCTGGACATTTGACAGTGGATAAGGACATCATTCCTATGGGTTCCAACCTAACTGTCCACTGTAAGTCCAACACTGAGCAGTGTAACCGACTCTTCATCATCGAGCTCAATGGACAAACCATcctgcagaaaaacagctgctCAAGTGTGACAACACAGCTGGTGGTCAcccagcccaaattcagcctccACTGCAAGGTGAAGCAGGGGAGGACAGTTCACAACGTGTGTGGACGGGACATTGTGGCTGACCTGATTCCAAGTGCTCCACATATCAAGACCATTGAGTTAACTAAAGGTTCCTTGTCTGCCACCATCCACTGGCAGAGCCCAGACAACATGGAGCTTCTGAAACCCAAGCTGAGGTTCAGGAAAACAGATGGATCTTCAGTCTGGATGACAGGCAAAGTGATTCAGCATTACAAAGGAAAAGTAATGATGCTGGATGATTTGGAGCCGCTTACTTCTTATGAATTCGAGCTGCGTGTCTGCACAATCTCACTGGAGATTAACTGCAGCCATTGGAGTGAACCAGTCAGAAAAAACAGCTCTGGACAAGCACCTCTAAACAAGCTTGATGTGTGGAGAGTCATAAGAAGAAATGAAGGGAGTGACACACTGAATGTGACGGTATTGTGGAAGGCTCTTTCTTCTGAAGATTATAAAGGAGACTTGCTGGGTTATGAGTTGGTTTATAAAGAGaagaacaccacacacactctgaacTGCTCGGTCACTACTATCCAGTATACACTCCAGCTGCACCACGAGGTGACAAGGGTAAATGTAAGTGCGGCTCTTTCTTCTGAAGATTATAAAGGAGACTTGCTGGGTTATGAGTTGGTTTATAAAGAGaagaacaccacacacactctgaacTGCTCGGTCACTACTATCCAGTATACACTCCAGCTGCACCACGAGGTGACAAGGGTAAATGTAAGTGCGGTCACATCAGCAGGGAACTCTCCACCAGCTCCTGCATGGCTGATTTGTGCAGAAACCCCAGTTCCAACATTACACTTAAGTCAAACAGCAGAGGGCAGAATTCACCTGGCCTGGAACTCGTCTCATCAGTCCTACATCAACATCTCCGAGCAAACATCAGGTTTTGTAGTTCAGTGGCAAACTAGCCCATTCGAAGTGCAATGGAAGAggattaaaaaagacaaaatctcAACATTTATTGATGacataCCACCTTGCAGTACAGTGAATGTGTCACTGTGTGTTGAAAGCATCGAGGGAGTATCACGTCCTGTTTCTGGACAAATTCTTGTGAAAGATCGAAAGAGTCCACCTGGCCCAGGACACAATGATAACAAAATACCAAAAGGGGAATATATTGTACCTGATCCAGTTAAGTCTGCTGCTGATGGGCCTGGCGATATGGCAGTAATTGGGATCTGTGTAATGGCTGTGGTTCCAGTATTCATCCTGATAAATCTGATGTACCTAAAATGTGCTCGAAAAAGaATAAGGAAGGTATGCATGTCAGTGGGACCTTCTTGGCTTTTTCCAACTTTGCCAAAACTTGGAAACAGCAACGCTATCAAACTGCTGCAGAATGAAAAATATGGTTCTGAAATATGCTGGCAGCCACTGGACAGTGATCCACCTTTATCTCCAGTTGAGGACTTCAGTCCATCTGTGGAACTGAGGGATTGTTACCCTGTTACTCATACAGAAGAAACCACAGACGAGAAAAGGGTTGAGCAGGACTGGGCAGTGTGTGCCTATAAACCACAAATCTCAATTGTTTCTCAAAGAATCGAGTCGGTCTCTGAAACAGCAGAAACAGAAGAAGATGAGCATCCTTGGCCAGTCTTCTCACCTGGCTTCTTTCCAAGTCAAGGTATTCATGGACCTCTGAAAAGCTGCTTGACTGTGGACGGAACACCAGTATCTGTGGATGTTGTTGATGGTGTCTTTTTTATAACTCAGAGTACTTTGGAAGAAGATGTGTGGAGTGTGGCAGGAAATGTGGCATTTGCAGCGGCAGGAAATGGTGAAGAGAACTCATATCAAGGCCAGACCGTGCTGCCCAATGACTTTGTGAAGTGCTTGAGAGAACCTTCCTGTAATGTCAGGCCTCACTTACCAAAAAGTGAGCTAAACCAGAGTTGCATGTCCAGACAGCTCTAAATACTTTACAGACTGATGAGCAATTACCACTGTACTGAGCAgttgtttggggtcattgtttaatatctgaaCAGGATTTTCTTCATCATTCGTAGACTAAGCCTATCTGAGCTCAGTTGtggagaaatgaaaaaaaaaaacattatgttttATAAACTAAACTAGACTTTGTAAggctattaaaactttatggatGTTTTTGGGACCTTCACCAGTGTCACCAGGTCAGATATACAACCACAGTGACACTACTTTTAGCATTAATTTCTGTGGTATTTCTGTGAGGGAAATGTATACAGCCCTACAGGTATTCTGTAAATATAAACCATATGGTGTCCTAAATTCAACAATTATGTTTGTTTCAGAATATTTCAACTCATATTCACTACTATTTCTGTAACTTTACCTTAGGAATAAGGCATTAAGATGCTGTGATGTAACACTGACAGTGATTGATAAGAGTTAGTATAACATTTGTTTAACACACAAGACGCTTCCAGATGTAATACAACATTATAGGTTTAATATGAAAAGGCTATTTAACAATAAGGTTTTGCATAAGCCCAGACATGGGCAAAAGCAAAGCAGAAACTCTAGGGCGAAGCAAAGACttcaaaacacaaattaaatctTAAATGGGATGCAAAGCAAAAATGCAGAGACAAAACTTGGTCAAATTACAAAGTCAGACAAGGCAAACAGGAAATAACACTGGTAACTATAGGCAGAATGCAAAGAAGCCATAAAAACAAgtgcatatactgtacatacatatacacgGGTGATAATGATCAGCACTCTGGAGATGATGAGCAGAAAAAACAGTTCCTGATTTTTGGGTTGTGATCTGGTGACCTTGATTTTAGGCTATGAGGGATCTTTGAGTAATGTACTGAAGAAAACTGACAAGGCTGAGGGAGAATCCAGAAGTGTTACACTTAGAGACACAAAtagaatagtttggttcttttttttttaaggaggtGAAGatttaaagaatgtaaatactatacatttgttttcagtgttgtatagattttacatgtttttatttaggtCTGTTTAGGTTGATTAGGGACATTTCTCATAGTGCTGAACTGAAAAATTTAAATGGAAATCAGTACTTTTGAATAAAGGGTTCTTCAGTTGTGCATTTCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650726.1 lncRNA downstream 34223 40717856 ~ 40721125 (-) True LOC111193788
TU158362 lncRNA downstream 45556 40707782 ~ 40709792 (-) True G117253
TU158346 lncRNA downstream 101573 40653051 ~ 40653775 (-) True G117240
TU158341 lncRNA downstream 105245 40642948 ~ 40650103 (-) True G117239
TU158323 lncRNA downstream 129206 40624337 ~ 40626142 (-) True G117223
TU158390 lncRNA upstream 8564 40786221 ~ 40786527 (-) True G117274
TU158392 lncRNA upstream 15098 40792755 ~ 40795804 (-) True G117276
TU158393 lncRNA upstream 18255 40795912 ~ 40797819 (-) True G117277
TU158398 lncRNA upstream 21942 40799599 ~ 40802426 (-) True G117278
TU158379 lncRNA upstream 38476 40816133 ~ 40833502 (-) False LOC103041916
XM_007258353.3 mRNA downstream 6046 40731603 ~ 40749302 (-) True LOC103034527
XM_007258358.3 mRNA downstream 118659 40622153 ~ 40636689 (-) False uhmk1
XM_007258359.3 mRNA downstream 118660 40619482 ~ 40636688 (-) True uhmk1
XM_022675829.1 mRNA downstream 118663 40619482 ~ 40636685 (-) False uhmk1
XM_022675830.1 mRNA downstream 118664 40619482 ~ 40636684 (-) False uhmk1
XM_022675837.1 mRNA upstream 39134 40816791 ~ 41017814 (-) True LOC103041916
XM_007258347.3 mRNA upstream 447184 41224841 ~ 41249611 (-) True LOC103032504
XM_022675838.1 mRNA upstream 473360 41251017 ~ 41260579 (-) False c13h1orf210
XM_022675839.1 mRNA upstream 473360 41251017 ~ 41259970 (-) True c13h1orf210
XM_015608133.2 mRNA upstream 473361 41251018 ~ 41260579 (-) False c13h1orf210
XR_002650725.1 other downstream 391388 40360401 ~ 40363960 (-) False LOC103040080
TU157786 other downstream 2370750 38381270 ~ 38384598 (-) True G116805
trnaq-uug_2 other downstream 3662278 37092999 ~ 37093070 (-) True trnaq-uug_2
TU157486 other downstream 3709560 37041361 ~ 37045788 (-) True G116581
XR_001518677.2 other downstream 3723988 37023391 ~ 37031360 (-) False LOC103023810
XR_002650728.1 other upstream 804176 41581833 ~ 41582017 (-) True LOC111193790

Expression Profile