RNA id: XM_022675613.1


Basic Information

Item Value
RNA id XM_022675613.1
length 2938
RNA type mRNA
GC content 0.49
exon number 7
gene id tfap2c
representative False

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 26323691 ~ 26345773 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGAGGAGGAGAGCAGAGGGACTTGGCCGTCAGAGGGAGTCAGGTTGCTTTTGCGAGCAGCTCGCGCCCGTGTCGCTTCTTCCCGGAACACAACGTTTGGCAGTTGCGATAATTCTCCGGACAGTCCGTAGACTAGTAGGTCCAGAGCTTCATGCGTCTGGCTGGTCCACTTCTCCACAATCTCGGCTGCCCAATCCGCCAGTTGATGCATCTCATCACCGCGTGCTTTGCGCACTCTGGAGTAAACTGTAGACCTGCAGACAACTAAACGTAAAAGTCGCCTCGGTCTGAAGAGAAAATGTTGTGGAAGTTAGCAGATAACGTCAAGTATGAGGATGACTGCGAGCAGGAGAGACATGATGGCAGCAGTAATGGGAACCCCCGGTTACCCCACCTGCCCGCGGTCAGTCAGCACCTCTACAGTCCGGCTCCGTCCCTGTCGCACCCTACCGGCTCGGACTTCCAGCCGCCCTACTTCCCCCCTCCGTACCAGCCGCTGCCCTACACTCAGCCCAACGACCCCTACGCCCACCTCGGCGACCCCTTCAACATCAACCCCATACACCAGTCCCCAACCTCTAACCAGCAACAGGGGTGGCCCGGCCGCCAGAGCCAGGACGGGATCGCGGGGCACGGCCGCAGCGGGCTGGCCGGGCAGATCCTGGGTTTGGAGGGGGGGTCGTCCGGCGTGCGGCGGGACGGATTCAGGAGACCCGAGCTCCTGCCGCCGCACATCCACGGCATCGAGTCGGCAATAGGCGAGAACATGGCAATGCACGACATGGGGCATGGCCTGGACGATGTGGAAcacGTGGATGACAGTATTGTAATTGCAGACCAGACAGTCATCAAAAAAGTGACCCTCCCCAAGGGAAACCCAATGGGTCTTCCCTTCCAGAAGGAGTCCCTGCTGGGTATGGTGTCCAATCCCACAGAAGTGTTCTGCTCAGTTCCTGGGCGCCTCTCTCTCCTCAGCTCCACCTCCAAATACAAAGTGACCGTAGCTGAGGTACAGAGACGTCTGTCCCCCCCTGAGTGTCTCAACGCCTCTCTGCTTGGAGGAGTACTACGCAGGGCTAAGTCAAAGAACGGCGGACGATCCCTCAGAGAGAAGCTGGATAAGATCGGGTTGAATTTACCAGCAGGTCGCAGGAAGGCGGCTAATGTCACATTGCTAACAGCGCTAGTAGAAGGTGAGGCCGTGCACCTGGCCCGGGACTTTGGTTATGTCTGCGAGACGGAGTTTCCTGCCAAGGCCGTTGCCGAGTACCTCGGGCGGCCGCACGTAGAACGCAATGAGATCAACTCTCGCAAGAACATGCTCCTGGCAGCCAAACAAATCTGCAAGGAGTTCACTGACCTTCTAACCCAGGATCGCTCTCCGCTGGGTAACTCTCGGCCTGCGCCCATTCTGGAGCCAGGGATCCAGGGCTGCCTGACCCACTTCAGCCTCATCACTCACGGCTTCGGCTCTCCGGCCATTTGCGCTGCCATGACCTCGCTGCAGAATTACCTCAACGAGGCTCTCAAGCAGGTGGACAAAATGTACCTGAGCGTGGGCGGAGACTCCTCGCAGGGCTCCTCAGATGGAGGTAGCAAATCCACGGACAAGATGGACAAGCACAGAAAGTGAACTGGTGAACTGGGGAAGCTGGACTGGATGGGAACATTTTGAGGAGCATGCAGGCCCTCGTGTCTCATGGACTACACTTGACTTTGTTGCATTTTTTGATTTTTGTCGCTGTAGTCGTTGTTAATGGTTCGGTTCTGCGATATCCGCTCGGTTTTGATGGACGCTGGGCATCGCTCAGTTCAGCCtgttccttccttccttccttcagaTCCTGGTCTTCCAGAACTCATCCCTTCACAGTACTTCGCCTTCTTGAGTGGCCATTGGCTGAAATAGACAATTACGACTATTCGAATCTCTTCAAATCTCTTCGAATTTCAGCGACATGCACGTAGACCTGCACACCTCTACACGTCTACGGCTCAACACAAACAATATGGAGGCTCGTCTCTTTCAATTCCAGATACCATTTCAAGAGTTTATGtggaaatattatttttgtgtgtatttttttttttttttcatgaagaGGAAGCCCCTTTTTGTCTTCTTCCTTGGTGCTGAACCCCTGTTGAACATGCAGAGGACATGAGATCAGCTGAGATCTGGAGAACTCTTTGCTTGACTTCATTTGGATGCAGTGTTATTGTAATTCTTTTTGTCTGTGGGAGTATTGTTAGCATGGACGAGtgttttttgtgtatgtgtgtgtgtgttgtgtgtgtgtggctcttCTCAAGATCATTATAGTCAATGAGTTTGACTATGAGATTGAAATGACCCTGAAGGCATTGAAGAGACACATTTTGGGTGAAATTCAAATGCTGTTTCAGGGCCAGTAACTGTCTGGAAGTCTTCCTTTAGTTTCCAGCCATTGAAAATACAGAGCTGAACAAATCTTGTCCAGTTATCTGATTAAATCTGATTGATTCTATTGATTCAGAGAAGATCAGACTGATATCAGACTGAGACATTAGGCgtatgcatatgtgtgtgtgtgtatgtgtgtgtgtgtgtgtattacgtGTGAAATTGTATatgttttctgtaaatataGTACCTCTTTTCATGCTTTTAGTTGAATTGGACTAGAAATGTTTCCACATATCTTGCCCTAATTGTAAATATTTTCTAATTTATGTTGTAATTTAATGGGATTTGTAAATATTGGTACAATTCTGGTGTATGGTTTAACTTTCAGACAGATGTGTTAAACTTTTTATAAACgggttagtgtttttttatcatatagTGGTTAGGCCCTGGGGatgatgatgattttcttttcaTATCTGTGTAAAAGTCTTTTAAAGCTATAGGtcaaagaataataataataataataaaaaaacaacaacaacaatga

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0014032 neural crest cell development biological_process
GO:0014036 neural crest cell fate specification biological_process
GO:0060788 ectodermal placode formation biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153856 lncRNA upstream 31269 26292460 ~ 26296051 (+) True G113868
TU153831 lncRNA upstream 65214 26206189 ~ 26262106 (+) True G113846
TU153813 lncRNA upstream 225695 26092714 ~ 26101625 (+) True G113833
XR_002650625.1 lncRNA upstream 268189 26058199 ~ 26059131 (+) True LOC111193688
TU153671 lncRNA upstream 319973 26006875 ~ 26007347 (+) True G113732
TU153895 lncRNA downstream 114265 26460038 ~ 26460275 (+) True G113897
TU153900 lncRNA downstream 160031 26505804 ~ 26506031 (+) True G113902
TU153907 lncRNA downstream 270163 26615936 ~ 26616188 (+) True G113908
TU153939 lncRNA downstream 471444 26817217 ~ 26879565 (+) True G113930
TU153947 lncRNA downstream 691371 27037144 ~ 27065794 (+) True G113937
XM_007252676.3 mRNA upstream 7827 26271043 ~ 26319493 (+) True rtfdc1
XM_022675090.1 mRNA upstream 252869 26069067 ~ 26074451 (+) True LOC111193668
XM_022675088.1 mRNA upstream 264810 26059181 ~ 26062510 (+) True LOC111193667
XM_022675610.1 mRNA upstream 289226 26034676 ~ 26038094 (+) True LOC103035650
XM_022675604.1 mRNA upstream 626581 25690779 ~ 25700739 (+) False ncoa5
XM_022675092.1 mRNA downstream 1045241 27391014 ~ 27489522 (+) True LOC103037845
XM_022675620.1 mRNA downstream 1230461 27576234 ~ 27640363 (+) True snta1
XM_022675093.1 mRNA downstream 1630608 27976381 ~ 28022819 (+) True ralgapb
XM_022675624.1 mRNA downstream 1695999 28041772 ~ 28127236 (+) True kcnq2
XM_022675625.1 mRNA downstream 1696000 28041773 ~ 28127236 (+) False kcnq2
TU153586 other upstream 984552 25342455 ~ 25342768 (+) False ube2o
TU153545 other upstream 1065099 25261386 ~ 25262221 (+) True G113642
TU153256 other upstream 1851982 24474078 ~ 24475338 (+) True G113422
TU153243 other upstream 1907641 24411009 ~ 24419679 (+) False LOC103027315
TU153992 other downstream 1001676 27347449 ~ 27352444 (+) True G113979
TU153993 other downstream 1001676 27347449 ~ 27352444 (+) False G113979
TU154011 other downstream 1045256 27391029 ~ 27444946 (+) False LOC103037845
TU154976 other downstream 3780562 30126335 ~ 30129896 (+) True G114698
TU155153 other downstream 4504536 30850309 ~ 30880553 (+) True G114841

Expression Profile