RNA id: XM_022675758.1


Basic Information

Item Value
RNA id XM_022675758.1
length 1569
RNA type mRNA
GC content 0.55
exon number 22
gene id LOC111193774
representative False

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 36205672 ~ 36218972 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGGGTGAAGTGACTGTTGGAGTACCTGgccagagaggagagagaggagatccAGGACCTCGGGGAGAAGAAGGGCGGCCTGGACAAGATGGGGAGAGAGGCTCTCCGGGTTTCCCAGGTAGCAAAGGGGGCAGAGGGGACAAGGGTGAGGCGGGTCCTCCAGGAGGCAAAGGAGAGAAGGGTGAAACTCTGCTGGTGGGTGGGCCGGCCGGGGAGAAGGGAAATAAAGGCGAAACGGGAGAGCGTGGGCCCAAAGGAATGCAAGGGGGAAAAGGGCAGTAAAGGACAGGAGGGACCACCAGGGGTGCAGGGTCTGAGAGGAGAGCCTGGGGAGCGAGGCTCTACTGGGTTCCAAGGTGCTCGTGGTCCAGGAGGACAGAAGGGTGAGGGAGGACAGCCAGGAGTTCCAGGAGAagctGGAACTGCTGGAAAAGATGGCCTTCCTGGTTTGAGAGGAGAGAAGGGGGAGATTGGTCTTATGGGTATGCGTGGGATTAAGGGAGAACGAGGGTCCAAAGGGGCGTGTGGAGCAAATGGACAAAAAGGAGAAAGGGGGGATCCTGGAATTAATGGCAGACCAGGTTTGCCTGGAAGGAAAGGAGAGTCGgGTGATGTGGGACCTCCAGGAGCCACAGGAACCCCAGGAAAAGAAGGAATTGTTGGACCCAAAGGTGACAGGGGCTTTGATGGTGTGATGGGACCAAAGGGAACACAAGGAGACAAAGGTGAACGGGGACCCCCTGGCATCCCTGGCCCCCCAGGTCCCCGAGGTGCAGACGGTCCCTCTGGTCTTACAGGCCCTCAGGGGCCAGCTGGAACTAAAGGCCCAGAGGGACTGCAGGGACAGAAGGGTGAACGTGGTCCTCCAGGTCCAGCGATGGTTGGCCCTCGAGGTATTCCAGGAATTCCTGGAGAACGAGGAGAACAGGGTGAAGTAGGTCTTGATGGATctaaaggagagagaggagagccaGGCTTGACGGAGGATGAGATCCGTGCTTATGTTCGGTCAGAGATGAACCAGCACTGTGCCTGTGGAGGTGTTGGAGAAATTCAGCCACGTTCGCCGCTGCAGACTTTCCGAAGTCACTCCTCCATGTCCCCCGAGCTCTCAGTAGGCCGAGGGGATGAGGAGGGTCGTGAATTGCGTGTTGTGGTGAATACAAACGATCCAGACTATGAGCATATTTACTCTATTGAAAGCTATGATGACCCCATGGAAGAAATTGTTGATCTTACCCCCCCAGTCAACCAGAGCCAAGATCCGTGTGCACTGCCACTGGATGAGGGTGACTGTTCCAGATATACGCTGCACTGGTACTTTAATTCTCAGGTGGGCGCCTGTAGACCCTTTGTCTACAGTGGCTGTGGAGGAAATGCCAACCGCTACACACAGAAAGAGGAGTGTGAAAAACACTGCCTATGACAGAGAGCGTCTGTACCTTCAAAAAGTGGACAATAATTATGGGATTTCAGACTCCAAAACCAGTGCAAAATCCGTGTTCAATGTTTTAATCATATTCATCTGATGCTTCTGGGCTTCATAAATCTGCGACTGGACttcatcata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156858 lncRNA upstream 205616 35990033 ~ 36000056 (+) True G116105
TU156856 lncRNA upstream 221983 35982119 ~ 35983689 (+) False G116103
TU156780 lncRNA upstream 237794 35958543 ~ 35967878 (+) False tomm6
TU156931 lncRNA downstream 87378 36306350 ~ 36306762 (+) True G116155
TU157016 lncRNA downstream 124013 36342985 ~ 36343894 (+) False LOC103024058
TU157052 lncRNA downstream 197836 36416808 ~ 36462597 (+) True G116255
XR_002650720.1 lncRNA downstream 282261 36501233 ~ 36503562 (+) True LOC111193778
TU157176 lncRNA downstream 513176 36732148 ~ 36742014 (+) True G116349
XM_022675755.1 mRNA upstream 10248 36129984 ~ 36195424 (+) True col7a1
XM_022675756.1 mRNA upstream 10248 36129984 ~ 36195424 (+) False col7a1
XM_007254276.3 mRNA upstream 130126 36066977 ~ 36075546 (+) True LOC103028900
XM_007254275.3 mRNA upstream 139380 36061465 ~ 36066292 (+) True ccdc174
XM_007254272.3 mRNA upstream 149316 36050510 ~ 36056356 (+) False tatdn2
XM_015607118.2 mRNA downstream 12964 36231936 ~ 36243389 (+) True LOC103025322
XM_007254262.3 mRNA downstream 68085 36287057 ~ 36291813 (+) True LOC103024783
XM_007254255.3 mRNA downstream 95295 36314267 ~ 36320030 (+) True LOC103023094
XM_007254256.3 mRNA downstream 102871 36321843 ~ 36330036 (+) True uroc1
XM_022675761.1 mRNA downstream 111346 36330318 ~ 36334894 (+) False efcab12
TU156853 other upstream 217612 35982119 ~ 35988060 (+) True G116103
TU156628 other upstream 471313 35730653 ~ 35734359 (+) True G115931
TU156626 other upstream 472093 35730379 ~ 35733579 (+) False G115931
TU156625 other upstream 472093 35730653 ~ 35733579 (+) False G115931
TU156582 other upstream 529637 35674648 ~ 35676035 (+) True G115917
trnaf-gaa_2 other downstream 29801 36248773 ~ 36248845 (+) True trnaf-gaa_2
XR_002650721.1 other downstream 438420 36657392 ~ 36713884 (+) False LOC103044253
TU157374 other downstream 881042 37100014 ~ 37111598 (+) False LOC103045245
TU158023 other downstream 3139899 39358871 ~ 39359388 (+) True G116997
TU158258 other downstream 4580499 40799471 ~ 40803543 (+) False LOC103033994

Expression Profile