RNA id: XM_022675762.1


Basic Information

Item Value
RNA id XM_022675762.1
length 1343
RNA type mRNA
GC content 0.43
exon number 8
gene id LOC103023734
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 36335569 ~ 36340026 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGTGCTCAATGATTTGCATTTGTAAGcacaacactgtgtgtgtgtgttggtgggtgggtttactgtatttatataatctGAGGTTAGACCTGGGCTCAAATGTGAATGTAATATAGAGAAAGAGCGGTTATTATAGGAGTGCAGTAAGATGTCACGGATTTTTAGCTCACTTTTGTCTACTCGAGAGAATGGTCTCCTCTTCAATATGCTGGGCCAGGACTGCAGTgtgtcTGCTTGTTCAGTGGTGCAGCTGTTTATGGCGACTGCGGCTTGTAAAGGTCAAAAGTCAGAATGGAAATATCACAGTTGTGGAGTTGTGTGTTTGGTGCAGGACAGAAAATTACATTCATCCTTTATACGAGTCTTCTGTGTCAagAAAGCGAAGCTGCTTTGGGAGCAAGAGCTCTACACTCCGTTCCAGTATTCAGCACCTTGCCCCTTTTTCCACACTTTCCCTGGAGATGAATGCCAGACTGGACTGAACTTTACTGATGAAGAGGAAGCTGGCCTTTTCTACAGTGCTGTACAAAACTGCATCAAGAATACTAAAGCACACCCTGTGTTCATGCGCACTCACAGTCTGGATTCTACCTCTGGCTGGCTGCTAAGAGACAAGCTCAACACATGTGCGGCTGAATCTGGACAAGGCAGTCGCTCCTCATCCCCCAAAACTCCGACCAGTCCTGATTTTAAGGCAAGCACTCCAACAAAGACACCAGAATCCAAATCATTTTCTGTGTCAACTAACCAGTTGTCCAATTATTCGAAGACTCTCCCCAATCTTAAATCTGCATCTGGTTCTCTGGCCCAGAGAAAGGGACCCCTGCCCCCAATCCCTTCTAATGCAACCTCAGCCTCAACAAGCAACCTGGACAAGCTTAATCTGAGTAGCTTTTCCATTCCACTCCCCCCATCTTATCCAGCCcccaaaataaatcaaacaggAGTAAAGAAAAGTGCCAGCTTTGCTCCAgGAGGAACTTATTCCCCATCTGCCCTGAAGCACCACAAAAGCTTGCATTTTACAGATGACATGCAAGCAGACACTTACTTCGAGGATGATGAGTAAACACACCTGAAATCCTGTAAATACAACACAGCTATTGCAGTTTAATACCTGTTAACATGctctatatatactgtatgtactatCCTCTCCTTCTCATCATTTCATTCATGATCTCTGATGTCACTCCAGCTATATTCTGATTCAGTGTTTAGACCGTTAAGAAAGACTGCACATTTAATTAAACCCTGTATCTATGTGTGTGAATCAGTTTGATTTACTCTTTTATTGCAACATTTAAGACTGCAGTGAAAATAAACAACTTCCGGAGATTACA

Function

GO: NA

KEGG:

id description
K23612 WASL; neural Wiskott-Aldrich syndrome protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156931 lncRNA upstream 28807 36306350 ~ 36306762 (+) True G116155
TU156904 lncRNA upstream 111991 36189774 ~ 36223578 (+) True G116138
TU156858 lncRNA upstream 335513 35990033 ~ 36000056 (+) True G116105
TU156856 lncRNA upstream 351880 35982119 ~ 35983689 (+) False G116103
TU156782 lncRNA upstream 367872 35958543 ~ 35967697 (+) True tomm6
TU157016 lncRNA downstream 2959 36342985 ~ 36343894 (+) False LOC103024058
TU157052 lncRNA downstream 76782 36416808 ~ 36462597 (+) True G116255
XR_002650720.1 lncRNA downstream 161207 36501233 ~ 36503562 (+) True LOC111193778
TU157176 lncRNA downstream 392122 36732148 ~ 36742014 (+) True G116349
TU157189 lncRNA downstream 483438 36823464 ~ 36831576 (+) True G116359
XM_022675760.1 mRNA upstream 79 36330329 ~ 36335490 (+) True efcab12
XM_022675761.1 mRNA upstream 675 36330318 ~ 36334894 (+) False efcab12
XM_007254256.3 mRNA upstream 5533 36321843 ~ 36330036 (+) True uroc1
XM_007254255.3 mRNA upstream 15539 36314267 ~ 36320030 (+) True LOC103023094
XM_007254262.3 mRNA upstream 43756 36287057 ~ 36291813 (+) True LOC103024783
XM_007254260.3 mRNA downstream 3104 36343130 ~ 36359777 (+) False LOC103024058
XM_007254259.3 mRNA downstream 3953 36343979 ~ 36359777 (+) False LOC103024058
XM_007254258.3 mRNA downstream 10007 36350033 ~ 36359777 (+) True LOC103024058
XM_007254254.2 mRNA downstream 88444 36428470 ~ 36433844 (+) True sumf1
XM_007254252.3 mRNA downstream 106365 36446391 ~ 36449832 (+) True tsfm
trnaf-gaa_2 other upstream 86724 36248773 ~ 36248845 (+) True trnaf-gaa_2
TU156853 other upstream 347509 35982119 ~ 35988060 (+) True G116103
TU156628 other upstream 601210 35730653 ~ 35734359 (+) True G115931
TU156626 other upstream 601990 35730379 ~ 35733579 (+) False G115931
XR_002650721.1 other downstream 317366 36657392 ~ 36713884 (+) False LOC103044253
TU157374 other downstream 759988 37100014 ~ 37111598 (+) False LOC103045245
TU158023 other downstream 3018845 39358871 ~ 39359388 (+) True G116997
TU158258 other downstream 4459445 40799471 ~ 40803543 (+) False LOC103033994
TU158255 other downstream 4459545 40799571 ~ 40803543 (+) False LOC103033994

Expression Profile