RNA id: XM_022675780.1


Basic Information

Item Value
RNA id XM_022675780.1
length 1922
RNA type mRNA
GC content 0.41
exon number 3
gene id LOC107197751
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 36737746 ~ 36742046 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTATAGGTGTTAGCAGGTGGGCGTGTGTGGAGATCGTTCTGCTCTTAGGGAGGAAAGATGCCGGTTTTAATGCACGCCTGCACTTTACTGCTAAAAATCCTCACCCTGCCGCTGCAGGTGGCGGAGCTGCTGGGTATATACAAATTCTACAAGCGCGTGTTTCCCGTCATCGTGTACAACATTAGCTTCTCCTACAACAGCAAGATGAACGAGAAGAAGCGCGAGCTGTTCCGCGAGCTGCAGCGCTTCTCCCCGCGCGGAGGAGGGCCGCTGCGTCTGCTGGAGGTGGGCTGCGGCAGCGGCGCCAACTTCCAGCACTACCCCACCGGCACCAGGGTCACCTGCACAGACCCCAACCCCCACTTCCAGAACTACCTGCAGAAGAGCATGGACAAGAACGACCACCTGGTGTACGAGAAGTTCGTGGTGGCTCCTGGAGAGGACCTGAGGGTCGTGGAGGATAACTCTGTGGACGTGGTGGTCTGTACACTGGTGCTGTGTTCCGTTAAAAACACTCCCAAGGTTATCGGGGAGGCAAAGAGAGTCCTGAGACCGGGTGGAGCATTCTTCTTCTTGGAGCATGTGCAGGCGGACCCTTCAAGCTGGATTTACTTCTTTCAGCATGTTTTCCAGCCTTTAATGTACTATTTCGGTGATGGTTGTGAAACTACACGTGCTACATGGAAGCATCTGGAAGCAGCCGGTTTCTCTGACTTGCAGCTTCGCAAATTCCAGGCTCCACTTTTCTTCCTTATCAGACCACACATTGTCGGTTATGCTGTAAAATAATGGCAACACAAAAAGTTAGACCTGTATAAACTCAttgtatcatttatatatatttttatatgttattttttgtatatgtcACTGTAAGACAGTTTGGCCACAAATGTACTTCTAAagtaatgttcttaaaatgtcatatttactTGTTATGAGGATGTAAATCCATGCCTGAGATCTGAAATTTAATGAGATTTGTAAAAAAGTAATTCCCTTCTTGGGCAttgcattaaaaatgcattcaaagttTCTATTATACTGTACTAAAGTTTACCACTACATTATCTATATTAGTATCTCTGTTTCCTTTACGGGTGTCTGTAGACATTGAAAATCCTGCCCTGCCAACATGAGCTTTACCAAACAAGTGCTGCAGCACATCACTACACACATAGCATGGGTGATTAAACctagtaatatatttttatataattaacagGAAATCTCTGTTCAAactgctgtgtagtccaagccTAGGCTTAACCCCTGTCTTGGGAAACTGCTCCcatatttttactaaaaaagtTATGCTTTGTGTACTTTAACAAGAAAACAGCACTTGTTGAAGATTGCAAGGGATTAAGCAGTTAAATCTTAGAATAAAGATTTCCCATTGAAAGTCAAATTCATGTAAGGACTACGCCTACTCCCTGTCTGGAAAACCGACCCTTAAACATACACAGAAATTATTGTCAcagtttaatgtatttttgtatatataaagtTAATCTTAATTTTGTATGTTATCAAGGCCAATCAGAACATTAGCTTCTgaattataaatacattatattaacaGCAAGGGCTGGCATGGTAAAAGACTGCAGACATAttcaataaaagtgtttttgttaGCAGTAAATGGATCATAAAATTAACCAGAAGAAAAGTATGATAGTGAAACAACATGAAATAAGAGAGATGGATAGCagaaatataaagtatatttgACATAAGATACATGGCAAAGTCACAAGAACAAAGATAATATTGTTCTAGTGTAATGTGCCAAAATGTGCAGCATTGCAAGAATGGTCTTAAGTCTGAAGAAGAAATCAAGAGTTAAAAGGTCTACGTACACTAGATGGCACTGATAGGCATAgtgttttatctaaaaaaaaaaaaaaactgggaa

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008168 methyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157248 lncRNA downstream 9507 36727991 ~ 36728239 (-) True G116407
TU157235 lncRNA downstream 15853 36714942 ~ 36721893 (-) False G116398
TU157239 lncRNA downstream 18133 36716881 ~ 36719613 (-) False G116398
TU157236 lncRNA downstream 23919 36710256 ~ 36713827 (-) True G116398
TU157240 lncRNA downstream 29573 36707769 ~ 36708173 (-) True G116399
TU157282 lncRNA upstream 57796 36799842 ~ 36820814 (-) True G116434
TU157273 lncRNA upstream 112814 36854860 ~ 36855962 (-) True G116426
TU157328 lncRNA upstream 211744 36953790 ~ 37010174 (-) True G116475
TU157343 lncRNA upstream 222486 36964532 ~ 36971714 (-) True G116483
TU157353 lncRNA upstream 254848 36996894 ~ 36997753 (-) True G116492
XM_022675779.1 mRNA downstream 4355 36729963 ~ 36733391 (-) True LOC103029516
XM_022675773.1 mRNA downstream 217638 36488583 ~ 36520108 (-) False LOC103029840
XM_022675772.1 mRNA downstream 217638 36488583 ~ 36520108 (-) True LOC103029840
XM_022675774.1 mRNA downstream 217638 36516786 ~ 36520108 (-) False LOC103029840
XM_022675770.1 mRNA downstream 257545 36459983 ~ 36480201 (-) False smarcc2
XM_007254228.3 mRNA upstream 83239 36825285 ~ 36830441 (-) True LOC103042096
XM_007254227.2 mRNA upstream 92024 36834070 ~ 36839043 (-) True LOC103041794
XM_007254225.2 mRNA upstream 140764 36882810 ~ 36892252 (-) True LOC103041181
XM_015607106.2 mRNA upstream 153813 36895859 ~ 36902148 (-) True LOC103040574
XM_007254221.3 mRNA upstream 181244 36923290 ~ 36940623 (-) True b4galnt1
TU156955 other downstream 675817 36056563 ~ 36061929 (-) True LOC103028059
TU156811 other downstream 779317 35955109 ~ 35958429 (-) False LOC103031109
XR_002650714.1 other downstream 857455 35869803 ~ 35880291 (-) False LOC103034399
XR_002650713.1 other downstream 857455 35869803 ~ 35880291 (-) False LOC103034399
TU156800 other downstream 922424 35813621 ~ 35815322 (-) True G116068
XR_001518677.2 other upstream 281345 37023391 ~ 37031360 (-) False LOC103023810
TU157486 other upstream 299315 37041361 ~ 37045788 (-) True G116581
trnaq-uug_2 other upstream 350953 37092999 ~ 37093070 (-) True trnaq-uug_2
TU157786 other upstream 1639224 38381270 ~ 38384598 (-) True G116805
XR_002650725.1 other upstream 3618355 40360401 ~ 40363960 (-) False LOC103040080

Expression Profile