RNA id: XM_022675783.1


Basic Information

Item Value
RNA id XM_022675783.1
length 4369
RNA type mRNA
GC content 0.42
exon number 15
gene id os9
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 36947965 ~ 36961567 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGAACTGACAACGCCAGTTTGGGATGTGAGGGAAACATGGCTGCTTCCTTGGTTAGGTGTTTGAGGGGgctgtatgttttgtttttgatatGTCTCCTTTTCGCCTCTGCTTTCCTGAATTTAGAggaattaaatgaaatgaaatatggCATCCAGATTCTGCCCGACCCGGTTATCATGGGCCAGGTGGAGGATGTAATGTTGGTCTCCAACAAGTACAAGCAGCTGTATGAGTGTCGCTTACCTGCCCAGGCAGTCCGCTTCCACCAGGATCCTGTACCAGAGGCTGACTCTCAGGGCTACAGTGGACCGGGGATCACTGAGCTCCTGAAGCCCATGCAGACTGCTCCCTGCCTTGTCAAGACCAAAGACTGGTGGACCTATGAGTTCTGTTATGGCCAGCACATTCGACAGTATCATTTGGAAGATTCAGAAATCAAGGGTGATGTCCTCTTCCTGGGTTATTTTGAATCAGAATTTGACTGGACCAATGAAACTGCAAAGGCCACTAAACAACACAAGCTGAAGAGATACCACAGCCAGTCTTATATCAATGGTTCCAAGTGTGATCTAAATGGCAGCCCAAGGGAGTCAGAAGTCAGGTTTGTTTGTGAGGAGAGTTCAAGTGATTTTATTGCTCGTGTGGATGAACCTCAGTCCTGTCGCTATGTTCTCACCATACACACCTCTCGCACGTGTCAACACCCACTCCTGCGCCCACCCTCCTCTGCCAAACCACAGGGCATTGTGTGTCAGCCTGCTCTCAGTGCTCAGCAGTACATGGACTATGTCAAAGCGCAAGTCTCTGACACTAAACGTAAAGTGGAGCAGATCTCAGAAGAGCTAAGAAACCTGGATCAAATTTTGTCCAAAGATCAAACCAGTGAGACGACAGCAGCAGCAAATGACAAAATAGAAGAAGAGTCTGCAGCATCCAGTTATAAGCTGGCCTCAGAGACTGAGGATAAAGAGGCTGTAGAGGAAGAGGCTGAATTGGCCAATGTGGAGCCAGATGATAAAGATTTCTGGGATGGTGTCACCAAACCAGAGAGTACAGATCAACAGACACCTGAAGCACAGGAGTTTGATGATTCTCTGGAAAACCAGCCTCAAGACAATGACCTATTCGGGGAggaaaagtttaattttaaaataatcacaGACCCTGCTGACCTAATGAAGTTTGTTCAGCACCTCAGGGAGAGCAACAAAAAAaagGCACATcacaaaaatgagaaaagcCAGTCACCTTCACAAAAAAGTGAACCTGAGGAGGCAAAGATGAAAGAAACCGAGGTTGACAAAGAGGAAGGAGATGAAGATGAGCAACTTCTTAAGGAGTTTGAGGAAGAAATGGCTGATCTGACTGTGCCTCCTTCCAAGAttgaagaaataaaagaagaaatggAGAAAGAGTTTGATAACATCATAGAAGAGGCTCAGCAGGAATTAGAATCAGAGGGCCTGAAGGGGGAATTTGATCGGTCCCAAGCAACTCAGACTTTGGAGAACACTTTAGGCAAACTTCTGGATCGTTTGGAGGATAGGACGGGAGAGGATGCAGAATCAGAAGATACAGAGGCTCATACAAacccacaaaaaaacacacaagatCCAcctgagacagaaacagacTCTGCTAGTGGTGGTCCCAGTCTTGTCCCCAAAACCCCAGCACGGGAGCTTGGCAATGGGGAGCAGGTAAAAATCAGGGTGACTAAGTATAAGGTGGGTGGAGACGTGGCTGCGGGAGCGGTTGCCGGGGGCGATGGTCGTGAGGGAGGTGTGCAGGTGCGAGAGCTGGGCGAAAGTGACCCCCAGTGGCAGCAGATTAAGGATGTGGTCACAGAGCAGCTAGGAAAGGCTGGCATCAAGGCCGAAGGCAAGATTGAGGTAAAAATCTTAACGCGTAAAACAGCAGAGGAAGCCGGAGACCAGTGGCTAAGTGAGGAGGATACCAAATCTTTTAGAGAACTACTCATCAACCTACTGACTGGAGGCACAGAGGAAGTGTACAAAGAGCAAAAGAGGCAGCAGGAGTTGGAGAACAATTACAGATTTGTTTGGGGAGAAAAACAGGAAGAGAGTCAGTCTTCAGGAACCAGCGATTCAGATGAACTCGATTTCTGAACCTGGATTTCTCTTCAATTTCCTTTCTTCAGACCTCAGGGAGGTAgaagaaataaactaataaactgtACATTGGAATACAAAAGAACTTTGGACTCTTTAGCTCCTGTACAGCCTTTGCTTGGACTGCAGTTTTTTGCAAACACTGTGGTTGTCCTTTTTTCATGCTGTGACAATTTGGACAATATGTGGCTTAATCATAAAACTCTGAATGAAAGTCTCATGAAACCTGAGAGGGGAATTAAAGCCTCTCACACTCCAGAATGATGCGTTCCCATTGTAAAAGCACCCGTGAACAATAAATCCTGGAGTACATTTTCTTATGTTATAAACAAACATACTGAATGTTTGATACAACTGTTACTGTTATGtaacagtattttttctttgcagTTTATTGCTAATGCTGCCTACTTCCTGAACCCATGCGATGCTAATTACAtttgtatgtgtctgtgtggtttAGATGTGATGATATAACAGATTTTGGACTGTTAGTAATTGTAATATCTGTTCTGAGAGTGGTGAGTGCTGTACAGGTAGATGTACAGATAGATGTTCTATTTCACAATGAAGGGCTGTTCTACTTTGGCTTTTGTTTCATGCATTTTAACAATCTCTAAGGTTTCCCATGTGATTATTGGATCACTGACACCTGGAGGAATAGGTGATGTTCTGAATCCAATACAGGCGTATTTTGCTGTGAGAGAATCTAAGATATTGCAAAATCTTGAGTGAGATTATAGGACAGAgtttattgcattttaaataaatgagccctgtttaaaatgttatcCTTGATTATATCAAATAATCAAGACACATaggaaaaatatgtaaaacaatGTTGTCTTCTACAGTTGGGACACTTTATTGTTGACATATAATGGTATGCATACTTTCACTGAGCACTTTTTATGAACCCTAATACTGGATGGGGCATGCTCTCAAAACAGCCTCATTTTACATTGGCGTGGATCCTGTTGACATGATTGCTTTGTGCAATTCCTACAGATTCCACAAGGGTTGTATTGGATTTAGACCTGGTGACGAGGAAGGCCACTGACAAGCTCATTGTTATGTCTCAGAAATAAATGACCTGACTTTTGCTGTGCAACATAGTGGGTGCATTATCATTGTGCAAGTAGCCATTAGAAGAATTGGTCATGAAGGGGTACATAAGGTCAGCTCACCACAATTATACTGAGTGGTTATCTGAGTTCCTGTAGCATTGTGTTGGATTAAACCAGTCTGCATATTGTTCATTGACCTTTCTCATCAACAAGGTGTTTCTATCTGCAGTATTTCTACTcactggatgttttttttttatattacataattCTGAGTAAACTGTACAAACTTTTTCTGCTGAAAATCCAGGAGATCAGCTGTTCTAGAAATACTCAGAAATACTAAAATCTGTTAACCTGGCACCAACAGCTATGCCACATTCCAAATGACTGAGATCTTATTGTTGCCCCTTCTGTTGGTAAACGAAAACAATGTGCTGAGTCATGATTCTATGCATTTTTATGCAGTGCATTGCTGCCACATGATTGGCTGCTCAGATGATATTGCACAAATCAGTAGGTGTACAGGTCTTCTTAATAAAGTGCTCAGTGAATATATGCTGCTGACTTGACCcagtacaaatacaaatatagtcTGTAATTAATGACAAGGCAAACTTTTAATAGCATATCAGATTCTGATGCCCAAGCTCCATCCCATGTTTGGACTGCTTTAATAAATATAGAGACAGTGCTATAATCAATTATTTTCAGTCTATTTTGCGCATTGTTCCCAATTCATTGATGCTAAATTAGGTTTGGTGAGCTTAATGCCATACTATCTTGTTTAGCCCAAATTACTGTGCAATTACTGCTGCACGTTGCGACCAATAAAATACAGGTTTTTGAGATTTTATTGATCATTCTCTCTTGTCCAAGGAAATGAGCTGTACAGCAGGATTGTTTTTGCacataaattgtgtttttttttctcccaaacAGGCTTGTAGCCAAACAGCCTCTCAAAGAATATGACTGCTATGGATGTGagatatttaatatgtattttctatttgtCTTTTGCACAGTCCCAGCAGATAAGGGCTCTCTCTGTGTAAACTTTGTGAATAGATCTTTAGTAGTTTGTACATATCTGTGATATTGCTGGTTCTCTGTTCTGCTTGCCATCAGTGGCATAACCCCAGTAAAGCTCAATCCAAGCACA

Function

GO: NA

KEGG:

id description
K10088 OS9; protein OS-9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157209 lncRNA upstream 38316 36909203 ~ 36909649 (+) True G116378
TU157190 lncRNA upstream 104727 36840841 ~ 36843238 (+) True G116360
TU157183 lncRNA upstream 113443 36833489 ~ 36834522 (+) True G116353
TU157189 lncRNA upstream 116389 36823464 ~ 36831576 (+) True G116359
TU157186 lncRNA upstream 120097 36825294 ~ 36827868 (+) True G116356
TU157318 lncRNA downstream 49886 37011453 ~ 37014185 (+) True G116466
TU157376 lncRNA downstream 136687 37098254 ~ 37098533 (+) True G116511
TU157372 lncRNA downstream 160123 37121690 ~ 37124435 (+) True G116507
TU157406 lncRNA downstream 229503 37191070 ~ 37199094 (+) True G116532
TU157426 lncRNA downstream 290640 37252207 ~ 37252770 (+) True G116539
XM_022675782.1 mRNA upstream 28422 36904618 ~ 36919543 (+) False LOC103040047
XM_007254222.3 mRNA upstream 28422 36904619 ~ 36919543 (+) True LOC103040047
XM_007254224.3 mRNA upstream 65560 36876648 ~ 36882405 (+) True LOC103040875
XM_007254226.3 mRNA upstream 92003 36849647 ~ 36855962 (+) True LOC103041493
XM_007254229.3 mRNA upstream 128872 36747556 ~ 36819093 (+) True LOC103042615
XM_007254219.3 mRNA downstream 659 36962226 ~ 36971698 (+) True LOC103039123
XM_007249135.3 mRNA downstream 24365 36985932 ~ 36990049 (+) True apof
XM_007249133.3 mRNA downstream 32415 36993982 ~ 37010190 (+) True LOC103021407
XM_007249134.3 mRNA downstream 32430 36993997 ~ 37008624 (+) False LOC103021407
XM_007249126.3 mRNA downstream 79799 37041366 ~ 37050408 (+) True LOC103046153
XR_002650721.1 other upstream 234081 36657392 ~ 36713884 (+) False LOC103044253
trnaf-gaa_2 other upstream 699120 36248773 ~ 36248845 (+) True trnaf-gaa_2
TU156853 other upstream 959905 35982119 ~ 35988060 (+) True G116103
TU156628 other upstream 1213606 35730653 ~ 35734359 (+) True G115931
TU156625 other upstream 1214386 35730653 ~ 35733579 (+) False G115931
TU157374 other downstream 138447 37100014 ~ 37111598 (+) False LOC103045245
TU158023 other downstream 2397304 39358871 ~ 39359388 (+) True G116997
TU158258 other downstream 3837904 40799471 ~ 40803543 (+) False LOC103033994
TU158255 other downstream 3838004 40799571 ~ 40803543 (+) False LOC103033994
TU158846 other downstream 5390240 42351807 ~ 42355784 (+) True G117642

Expression Profile