RNA id: XM_022675816.1


Basic Information

Item Value
RNA id XM_022675816.1
length 3602
RNA type mRNA
GC content 0.44
exon number 25
gene id chd1l
representative False

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 38972149 ~ 38996466 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCGCTGATTGGTCAGTTGCCTTTTGAACACGCCCACTCCGGACAGAGGCGCGCGAGTGGCGCGTAGAGAAACAACAGCTGGTCGCTGagagaaaagtgaaaaaactGCGCTGAAAATGGCGAGAAAACACcaggagaagaagaaaatgtCGAAGTtccttcaagcagttcagaatTTACCGGAAAGAGTCAAGTCAGACTGGACAGAAAAAGATTTGAATACTTGGGGACTGAGAGAAATCAAGCTGCGCTCCTACCAACTTGCTGGAGTTAAGTGGCTATCAGAAGGCATGGGGATTCTTGAAGGATGCATTCTTGGTGATGAAATGGGTTTGGGCAAGACTTGTCAGACAATTTCCCTGCTGGCGTATGCCCGAGGTTTTCTTGGCATGGATGGTCCATTTCTGGTTGTAAGTCCTCTGACAGTTTTGGAGAACTGGAAACAGGAACTGGAGAGATTCTGCCCCAGCCTGTCTGTGGTCTGTTACACTGGGAATAAAGAAGAAAGGGCAGAGCTACAGAGAGAGATTAACAGCAAACAATTCCACGTCTTGTTAACTACCTATGAGCTTTGTCTGAGGGATGCACAGTGGCTGAAAAGGAGAAACTGGAAAATTTTGGTTGTTGATGAGGCTCACAGACTAAAGAACCAAGCATCAAAGCTCCATGAAACCCTTTCAGAGTTCTCTGTAGATTTCAGACTTTTGTTAACAGGAACTCCAATCCAGAATAATCTGCAAGAGATCTACTCCCTCCTCACCTTCATTCAGCCCAGCCTGTTCCCACATGATGCCACAGAAGAATTTGTCAGTAGTTATGCAGATGTGCAAACTGAAGATACACTAGtgaaagAGCTCCACAAGGTGCTGCAACCGTTTCTGCTGCGTAGGGTCAAGGACGAGGTGGAGAAAAAACTGCCTCAGAAGAAAGAACTGGTGGTTTATCACGGAATGACTGCCCTGCAGAAAAAACACTACAAATCCATTCTGATGAAAGACACagCTGCATTTGAAGCTCATGGCAAAACACGCGCGCTCCATAATATTTTGATGGAGCTGAGGAAGTGTGTGAACCACCCTTACCTTATAAGAGGTGTAGAGCCATATCCATATGTGGTAGGGGAGCATGTGGTGGAGGCCAGTGGGAAGCTTTCTCTGCTGGATCATATGCTGGCATATCTGCTAGAGGGAGGTCATCGTGTTCTGCTTTTCTCCCAGTTTACGTTAATGTTGGACTATCTTCAAGAATATGCGGAGCTTAGAGGCTACGGCTATGAGCGCCTTGATGGCTCAGTCCGAGGAGAGGAGCGCAATCTAGCCATCAAGAACTTCAAAACCAAAGACACTTTCATCTTTCTCCTCAGCACCAAAGCTGgtGGGGTTGGTTTGAACCTGACAGCAGCTGATACTGTGATTTTTGTGGACAGTGATTTCAATCCCCAAAATGACCTACAAGCAGAAGCTCGAGCCCACCGGATTGGACAGGAAAGgGCTGTAAAAGTAATCAGACTCCTTGGTAAGGACACAGTGGAGGAGATAATTTACTCGCGCGCTATGTCGAAACTGCAACTCACCAACACAGTGATCGAGGAGGGACGTTTCTCTCTGTTGGAGAATCCAAAGACTGCTTCCTCTGCTCCAgaaTTAAGAGACATTTTAACGTTTGGAGTGGATAAGCTGCTGTCGACAGAGACCAGTTCAGTTCAGAATGTGGACCTTAAATTGATCCTGGGCTCTTCTAAGGATGGCTGCTGGTTGATGGATGAAGAACCTGTGATTCCAGTTGAAGATGATGAAGAGAAAGCAGGACCAAGCCATATGTACGAATTTGAAGGGAAGGATTACTCCAAAACCCCCAGTGCAAAAGACCGGGAAGTATTAACATGTCTGTTCGAGGAAGAGTTAGCTTTGAAAATGGATTTAGTGAATGATGGCCGAACACTACGCAGCAAAACTGGAAGCTTTTTGGCTGAGCCTCTGGCAACCCCGTCAAGAAAGAGGACTTTGACAGAATCCCAGATGGAAGAGAGGCGCCTAAAGAAAGAGGAATCTATTGCTAAGAAAGCCAAGAtacaagaagagaagaagaggcaACGAGAAGAAGAAATATACAAGAACAAGATGGCACGGTGGGACTTGTGTGGGTATAAGTCCTTGTGCTTATCCTCTACTGATAGCGAGGGAGAGGATGTGGATGAAGATGGTGAAAACAGCAGTGTGAACTCTACAGACTCCGAGGACACAGAAATTCATTATGTAATTGGTGATGTTACCCACCCTCAGACTCCACGGATGGATGCCATTATTGTTCATTGTGTCGATGACTCTGGGCGATGGGGCAAAGGAGGGCTGTTTACAGCCTTGGAGGTCCGTTCTGATGAGGCAAAGAAACAATACGAACTAGCTGGAAATATGGAAGATTTAGACATTGGTCATGTGCTGCTTTTTCCTATTGAAGACAAGCAGCCAACACTAAATGGGCGAGACCATCTTGCACTCATTGTTGCCCAGAAAAGAGATAAGTCCAACAATGTGTCAGGCATTCAGCTCACTGCTTTGGAAAAGGGTCTCAAGAAGATCTACAGGGCTGCCAAGAAACTCAAAGCAAGTGTCCATCTCCCACGAATTGGTCACTCCACCAAAGGTTTCAACTGGTATGGCACTGAGAGACTGATACGCAAGCACCTAGCCCACAGAGGCATCCCCACATTTGTATACTACTACAAGCAAACTCCCTCACAGTCTACTGTGGAGGCCTCATCATCTCAGGCATCAACTTCTTTGTATTACTGGCGTAGTCATAGTCCTTGTGATTCTGCCATGGAGTCCCCACAGAGCTCAATCTCTTCACCCCAGGGTAAAGGAGCTCCTGGCCTGCCTGATTTCATGAATGGTGTTCATGTATATTTCCACAATATCGGTGACACTGACAAGAAGACGCTTGCACGCTACCTTATTGCGTATGATGGTGACGTAGAAGACATCATGACTTCAGAGGTTACTCATATTGTAGCAGAAGTGGAAAGTCCAAATCAAATACAGGAATTACGGCACTTTAACACCCAGTATCCCCAGGCAGCCGTTGTAAGGAGGAAATGGCTAGAGTCTTGCTACGCCAACCAAAGAATTGTAAATTCTTTCAAATATAACCATAAGTTGAAATGACATTGCAAGTTCTTCACTGTCTCTTAAGGAATCTCTCTTTGAAATCTACACTTTACTAAATTATAAATCTTAAAGGATCAGTTTATCTTggtaaaaaatttaatttgttttatttatgagtCTTGTAAGATTAAAATATTTGGGAAAAAAGgactgaaaatgagaaaattatttattgaaATGAGAGATACtttgagatagatagattgcTCAGTTTTCCATGGGTTATATGGTTGATTTCTGAATGTTTTACCACTTTATGACTGTTGTTGAGATTGGACACATTCTGACTGATTTATGTTTTATGGGTTACATGGTTATTTCTGAATGTTTTACCACTTTGTGACTGTTTTGAGATGGGATAGTCTGACTGCTTTGTTTTAGATGGCTGACATGGTTGTTTCctgaatgttgtaaataaatgcCCATCTAAATATGA

Function

GO:

id name namespace
GO:0006338 chromatin remodeling biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0016887 ATPase activity molecular_function
GO:0004386 helicase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157951 lncRNA downstream 17640 38953162 ~ 38954509 (-) False LOC103032356
TU157950 lncRNA downstream 17640 38953203 ~ 38954509 (-) False LOC103032356
TU157930 lncRNA downstream 304938 38630637 ~ 38667211 (-) False negr1
TU157929 lncRNA downstream 344034 38626779 ~ 38628115 (-) True G116923
TU157939 lncRNA downstream 345723 38625623 ~ 38626426 (-) True G116933
TU157957 lncRNA upstream 4178 39000643 ~ 39002353 (-) True G116946
TU157958 lncRNA upstream 4178 39000643 ~ 39002353 (-) False G116946
TU157969 lncRNA upstream 49882 39046347 ~ 39049565 (-) True G116954
TU157977 lncRNA upstream 154363 39150828 ~ 39151231 (-) True G116961
TU157980 lncRNA upstream 189050 39185515 ~ 39185756 (-) True G116964
XM_022675813.1 mRNA downstream 410 38964132 ~ 38971739 (-) True LOC111193784
XM_022675814.1 mRNA downstream 420 38964132 ~ 38971729 (-) False LOC111193784
XM_022675812.1 mRNA downstream 8455 38953162 ~ 38963694 (-) True LOC103032356
XM_015605766.2 mRNA downstream 72703 38632430 ~ 38899446 (-) True negr1
XM_007249079.3 mRNA downstream 72708 38632430 ~ 38899441 (-) False negr1
XM_007249076.3 mRNA upstream 413 38996878 ~ 39000165 (-) True LOC103032030
XM_007249075.3 mRNA upstream 6237 39002702 ~ 39011754 (-) True LOC103031712
XM_007249073.3 mRNA upstream 16573 39013038 ~ 39025153 (-) False lnp1
XM_007249071.2 mRNA upstream 17294 39013759 ~ 39025161 (-) False lnp1
XM_022675821.1 mRNA upstream 17297 39013762 ~ 39025162 (-) False lnp1
TU157786 other downstream 587551 38381270 ~ 38384598 (-) True G116805
trnaq-uug_2 other downstream 1879079 37092999 ~ 37093070 (-) True trnaq-uug_2
TU157486 other downstream 1926361 37041361 ~ 37045788 (-) True G116581
XR_001518677.2 other downstream 1940789 37023391 ~ 37031360 (-) False LOC103023810
TU156955 other downstream 2910220 36056563 ~ 36061929 (-) True LOC103028059
XR_002650725.1 other upstream 1363936 40360401 ~ 40363960 (-) False LOC103040080
XR_002650728.1 other upstream 2585368 41581833 ~ 41582017 (-) True LOC111193790

Expression Profile