RNA id: XM_022675824.1


Basic Information

Item Value
RNA id XM_022675824.1
length 3475
RNA type mRNA
GC content 0.53
exon number 8
gene id LOC103022251
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 39517500 ~ 39594023 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tcacagacacacacagatacacacacacagacagacacacgcaTACGCGCGCTCGCGCACActctctcacagacacacacacacacagggaggacgATGCGGAGCAGGAGGGTCAGGCAGAGCAGCGCTTTCTCGGACTTTATGAGGGATTTTTGTACGCGTCGTCCGTCGGCGTTACGCACCGCGCAGCAGCACTGCGGTCCCTGTCGCGGCTCTAAGCGCGGCGCTCCCCTTCGCTCGCGCTGAAAGGATACGCTTCAGCTCGGTTCGGGACCGCGGGGTCGTTTCAGGCGCGTGCGGGAGCTACTGACCAAACAACCGGACAACCGGACAGTCCGACAGCCTTCGCTAACGCTGCTGCACAATGGGAGCAGTGTGTTACCCAAGTTCATCAGTGGACTAGGGCACAGGCACGGGTGCTGGCACGGGTACTGGTCTAGGCTACTTCTGGTGATCTCGCTCGTGCTTTGATTGATTTCTGCCCTGTTTCTCCTCGCCTCGTTCTAATCTCGCTCCTCGCTCTGGCTCGCGCTAAAGCCCAGCGCGCGAGGAAGTAGTTGTCGGGGTTCGGGAGAAGAAAAGAAGCTGCACGCGGAGGATGGGACGCGCCCGGGTGAAGTTTGCGCACTGCACGCTGTTGGGGTGTACATTCTGTCCTTTCTCCAGATGTTCGTGGGGACAGGTGGCCATGCTGATCTGCGGTGCTGAGCGGTGGAGTGTACTGTTGCCTCAGTGTCTGTTCTGCTGAAGCCTGCGGTGCTTGGCCCCCTCATGGCTCTATGGGAGCTCTTGCTGTCCCTGGGCCTCCACTGCTGGCTGGCTGCTTCTGCCAGTCTGGCTGAGGATGGTCCCGCTGGGCCCCTGGACTGGCTTCTATCAGACAAGGGACCCTTCCACCACTCCCAGGAGTACACCGACTTTGTGGAGAGGAACCGCCAAGGCTTTTCCACCCGATACAAGATATACAGGGAGTTTGGCCGCTGGAAGGTGAATAACCTGGCTGTGGAGCGGAGGGATTTCCTGGACTCCCCGTTACCTCTCACCCCCGAATTCATTCGGAACATTCGACTCCTGGGCCGCAGACCCTCCGCCCAACTAATTACTGACAACCTGATCAAGAAATATGGGACTCATTTCCTCCTCTCAGCTACACTAGGAGGAGAGGAGGCTCTCACCATATTTGTGGATAAGAGGAAGCTGAGTAAGAAGGCAGAGGTGAGCGACTACACCAGCAACAGCACGGCTGTGACTCTGGAGGCGCTCCACCAGCTGGCTGCCTCCTACTTCATAGACCGGGAGAGCACGCTGCGCAAGCTGCACCACCTCCAGATCGCCTCGACAGCCATCAAGGTAACAGAAACAAGGACTGGCCCTCTTGGTTGCAGTAACTATGACAACCTTGATTCTGTTAGTTCTGTGCTTGTTCAAAGCCCAGAAAACAAAGTCCACTTGCAAGGCTTGCAGGTCATTCTGCCAGACTACCTCAAAGACACCTTTGTCCAAGCAGCTCTCAGCTACATCGCCTGCAATGGAGAAGGAGACTTTGTCTGCCGAGGCAACGACTGCTGGTGCAAGTGCAACTCCAAATTCCCAGAATGCAACTGTCCGTACATGGATATTCAAGCCATGGAGGAGAGTCTTCTGCGGATCTCGGAGTCATGGAACCTCCTCTACAAAGAGTTTAAGGATTCCGaTGAGTTCAAGACATTCCTGATGAGGCTGCCTCAGAACTTCTTCCTCAACACATCGACCATCCAGCACTTGTGGCTGCTGGATGGCACGTTTCAGCGGCGTTATGAACTGCTGGAGAGCAGTATGAAGGGCCTCTTCAGGAGGGCTCAGCGAGTTGTGTACAAGCTCTTCAGCCTCAGCAAGAGGTGTCAAAAGCAGCCCCTCATCAACTTACCCCGCGAAAGGCCGCGGTCGTACTGGCTGAACCACTTCCAGTCATTACTCTACTGCTCAGAAAGCAACCAGCTGGGATTCTTCTCCGAGGAGCTGCACACCTGCATCTGTGCGTACGACCAGAACTCGTGCCAGGTGCCCACTCCGTGCTCTATCGGAGAGGGTCCAGCTTGCTCTGCGTGTGCCAGTGACAACCACACCCGCTGTGGCAGCTGCAATCCTGGCTACATGCTGAGTCAGGGAGCCTGTCGACCCATGGTGGCGGATTCTACGGAGAACTACCTGGGTTTTGAGACTGACCTGCAGGACCTGGAGCTGCGTTACCTCCTGCAGAGGGCCGACCGCCGCCTGGAGGTTCACGCCATCTTTATCAGCAATGATATGCGCCTCAACAGCTGGTTCGACCCCTCCTGGAGGAAGAGAATGTTACTCACCCTGAAGAGCAACAAGTACAAGTCGAACTTGGTGCACATGCTTTTGGGAATCTCCCTTCAAATCTGCCTTACTAAGAATAGCACCCTGGAACCTGCCCTGACTCTCTTCATCAACCCCTTCGGCGGGAGCCACTCGGAGAGCTGGTTGATCCCTGTGAGCGAGAACAATTTCCCAGACTGGCAGTCCACCAAGTTGGATCTTCCACTAGAATGTTTTAACTGGACCTTGACTCTGGGCAACAAGTGGAAGACCTTCTTCGAGACCATTCACATTTACTTAAGGAGCCGCATAAAAACATCAGGGACTAGTGCCAACGAGAGCATTTACCTGGAGCCTCTGGAAATGACTGATCCTTCCAGGAACTTGGGCTACATGAAGATCAACAGCATCCAAGTGTTTGGCTACAGTATGCATTTTGACCCAGAGGCGATACGGGATTTGATCCTGCAGCTGGATTACCCGTACACGCAGGGCTCGCAGGATTCCGccctgctgcagctgctggagATACGGGATCGCGTGAACAGGCTTTCTCCGCCGGGCCAGCAGCCTCTGGACCTGTTCTCCTGCCTACTGCGCCACCGCCTCAAACTCACAGCCAACGAAGTGGTGCGCATCCATTCTTCTCTGCTGGCCTTCAGTGCCCGACTCCCAAACTCTCTCGATTATGAGACGACTAAACTCTGTAGCTAACAGCTAGAAGCCCAGAGAGCTGTACAATACCttcacacacagacaaagaCTGTGCATGAGTCAGCGCtgcaaatagagagagagaaaaaaagacagaaagacagaaagaaggaaaacaaGTAAAGTAAGAATGCAAAGTAAAGTATGGTGATGTATGATGGATTCATAATAAACTAATTGAGTCATCCGCAGAGATATTTCACAGATTCctcattcacacattcacaGAGCATTGTACTCAAAACAAAGGAGTCATTTTCTTGTAATGGTGCAGCACTAAGATCATAAAGGAGGGACAGGGACCTTTTACATATATGGTATGATTGTTTGTAACTTTTCTATGTTCTATTGCTTCAGTGACTGTGCACTTTCCTTGGACAGAatacagtgatgtcagtaagtTTTGTAGATAAAATTGCTATTAAAACATCATGTAATAACA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158056 lncRNA upstream 19142 39497799 ~ 39498358 (+) True G117025
TU158037 lncRNA upstream 87928 39429133 ~ 39429572 (+) True G117008
TU158035 lncRNA upstream 97707 39387514 ~ 39419793 (+) True G117006
TU158020 lncRNA upstream 163712 39353435 ~ 39353788 (+) True G116994
TU158011 lncRNA upstream 191731 39325543 ~ 39325769 (+) True G116985
TU158107 lncRNA downstream 244989 39839012 ~ 39847835 (+) True G117071
TU158150 lncRNA downstream 443277 40037300 ~ 40037531 (+) True G117102
TU158156 lncRNA downstream 497572 40091595 ~ 40091844 (+) True G117108
TU158160 lncRNA downstream 535069 40129092 ~ 40136727 (+) True G117111
TU158199 lncRNA downstream 766317 40360340 ~ 40362577 (+) True G117147
XM_007249064.3 mRNA upstream 305677 39209814 ~ 39211823 (+) True hes1
XM_022675822.1 mRNA upstream 436389 39032127 ~ 39081111 (+) True opa1
XM_007249068.2 mRNA upstream 436389 39032127 ~ 39081111 (+) False opa1
XM_007249069.2 mRNA upstream 436389 39032127 ~ 39081111 (+) False opa1
XM_007249086.3 mRNA upstream 1083643 38417049 ~ 38433857 (+) True cth
XM_007249062.3 mRNA downstream 360450 39954473 ~ 40009536 (+) True LOC103028032
XM_022675826.1 mRNA downstream 630028 40224051 ~ 40259219 (+) True LOC103027818
XM_007258376.3 mRNA downstream 679363 40273386 ~ 40276489 (+) True LOC103040699
XM_007258375.3 mRNA downstream 724735 40318758 ~ 40339674 (+) True LOC103040381
XM_007258372.2 mRNA downstream 823304 40417327 ~ 40567138 (+) True nos1ap
TU158023 other upstream 158112 39358871 ~ 39359388 (+) True G116997
TU157374 other upstream 2405902 37100014 ~ 37111598 (+) False LOC103045245
XR_002650721.1 other upstream 2803616 36657392 ~ 36713884 (+) False LOC103044253
trnaf-gaa_2 other upstream 3268655 36248773 ~ 36248845 (+) True trnaf-gaa_2
TU156853 other upstream 3529440 35982119 ~ 35988060 (+) True G116103
TU158258 other downstream 1205448 40799471 ~ 40803543 (+) False LOC103033994
TU158255 other downstream 1205548 40799571 ~ 40803543 (+) False LOC103033994
TU158846 other downstream 2757784 42351807 ~ 42355784 (+) True G117642
TU158848 other downstream 2757784 42351807 ~ 42355784 (+) False G117642

Expression Profile