RNA id: XR_002650724.1


Basic Information

Item Value
RNA id XR_002650724.1
length 935
lncRNA type inter_gene
GC content 0.39
exon number 4
gene id LOC111193782
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 37852643 ~ 37886735 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGAATGCACACAACCTTTCAGCCAAGTACTGAGAAAACTACTGAGAAACAGTGTTGCCGCTGCAGATATACAAACAAATAGCAGCATTTATCCTGCTGTTCCTTCTCTTTAAGCTTATCGACTTTACTGATGGAAACTCGTGAAGAAAAGGTGATTGAACCccctgaaaaaaaggaaaacagccTTGTTAAAAGTGGACACACATGAGACACCACTGTCATGAGACTGAATGAAGGTGATTGAACCCcctgaaaaaaaaggaaaacaaccTTGTTAAAAGTGGACACACATGAGACACCACTGAAACTGAATGAAGAAAGTTTTACAGTGTTGCCCTCCAAAATACCTTGAGGATGTACTGCTCCCTACCAGCCTGCACAGAATGGAAGATCAGAAGACTGGGGATTACTGATTATCCCTTGAACAAAAAGGGGACAGAGTCTGTAGCAGAGCTGTTTCATGCAGAGCAGCACTGTTATGAAATGGCCTACTGACCTATGTAAGGATTTAAGGTTTCCATTTATCTAATAATGTCTTTAAACATACTGTGTTTGCCCTACAGTACATAAGACTGTGATTCTCACTGACCTTTAAACACTTTCTGTCACAACATTAAATTCTGTTATTTAAATATGCTGTGGAAACTACAGCGTTTACATTTTTGCCATGCTTCTATTACTTTACTTTGTAAGAACGGTTTCTGTTTGTCCTAGAAGCATcagaaaatactaatactagaATACATTCCCCCAGTAAAATATTGTGCAACATATGGAATATCTCAGCATATACAGTGGCATACAAAAGTTTGTGGACCTTCAGGAAGATTAAGTAGACTAGAGAGGTCTACATTGTTCTACTATTCAGCAACACTTGCACAGATATTGCCTTCGTGGAAGAGTCATCAGAAAAAACCCTCTCCTCTATCTTTACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157482 lncRNA upstream 51889 37800217 ~ 37800754 (+) True G116580
TU157475 lncRNA upstream 179557 37671836 ~ 37673086 (+) True G116574
TU157460 lncRNA upstream 240339 37606985 ~ 37612304 (+) False gabra5
TU157440 lncRNA upstream 416151 37436248 ~ 37436492 (+) True G116553
TU157423 lncRNA upstream 579641 37267631 ~ 37273002 (+) True G116536
TU157674 lncRNA downstream 346739 38233474 ~ 38234081 (+) True G116730
TU157759 lncRNA downstream 503655 38390390 ~ 38394530 (+) True LOC103036266
TU157828 lncRNA downstream 620046 38506781 ~ 38511435 (+) True G116837
TU157832 lncRNA downstream 650108 38536843 ~ 38537047 (+) True G116841
TU157836 lncRNA downstream 683669 38570404 ~ 38570657 (+) True G116845
XM_015605770.2 mRNA upstream 23112 37620036 ~ 37829531 (+) True gabrg3
XM_007249106.3 mRNA upstream 23112 37620037 ~ 37829531 (+) False gabrg3
XM_022675796.1 mRNA upstream 240321 37524851 ~ 37612322 (+) True gabra5
XM_022675792.1 mRNA upstream 619434 37221320 ~ 37233209 (+) True LOC103043103
XM_007249105.3 mRNA downstream 261207 38147942 ~ 38154159 (+) True nipa1
XM_007249101.3 mRNA downstream 268364 38155099 ~ 38164964 (+) False nipa2
XM_007249100.3 mRNA downstream 270333 38157068 ~ 38164964 (+) True nipa2
XM_022675806.1 mRNA downstream 297590 38184325 ~ 38189931 (+) True fndc9
XM_007249094.2 mRNA downstream 361239 38247974 ~ 38262903 (+) True chst7
TU157374 other upstream 741045 37100014 ~ 37111598 (+) False LOC103045245
XR_002650721.1 other upstream 1138759 36657392 ~ 36713884 (+) False LOC103044253
trnaf-gaa_2 other upstream 1603798 36248773 ~ 36248845 (+) True trnaf-gaa_2
TU156853 other upstream 1864583 35982119 ~ 35988060 (+) True G116103
TU156628 other upstream 2118284 35730653 ~ 35734359 (+) True G115931
TU158023 other downstream 1472136 39358871 ~ 39359388 (+) True G116997
TU158258 other downstream 2912736 40799471 ~ 40803543 (+) False LOC103033994
TU158255 other downstream 2912836 40799571 ~ 40803543 (+) False LOC103033994
TU158846 other downstream 4465072 42351807 ~ 42355784 (+) True G117642
TU158848 other downstream 4465072 42351807 ~ 42355784 (+) False G117642

Expression Profile