RNA id: XR_002650731.1


Basic Information

Item Value
RNA id XR_002650731.1
length 739
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id LOC111193793
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 43442852 ~ 43449854 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCGAGCGGATCAGGCGGCTGGATGGAAGAAGCTGCCGCCATTTTGAGGCGCTCTGTGGAGAGTGAGCCGGAGCAGCAGCGCTAGTGCAGTAATAGGTTgcaatgattgtgaccggtgatgtctggttagaattgtccGTGGCTGGAATAGACAAGCCAATccggcagaaatcacatccacattcagagCAGGAGACCCCACTCGCCTATTTCGCAGGAAGTGCTTCTGACTGCAATTCCAGCTGACCAATGAGAATCCTACCTGGTGTGATTGGGGGAGGAGCTAACCTTTTAAATGCAGGAATTCAAGATGGCTGTTGGAGAGTATGGTATGCTGCCCTTGTGCTGTTTTAAATAGCTTTTGTTAGGACTAGTTAATTGTGTATTTTGCCAGCATGTTTCCTAAGTTTGtttcaataatatttatttaactgctttattttaggaaagtgcttttctttttagatattttacctGTGGTTGTTAACTTTGTTTTGTGAGAGGTTTGTTTGTTCCACATGTGGTTTCAAGCAGGCTAGAAAGAACTCTGCTTGGTTTAGTTTTACTAGCTTAGTGGACTAAAGCACCATGTATTTTGGATATTTGCCAGGAAAGTATATGGTAGttagctttttctttttgttctctAGATAATTGTAGGTAATAATGATTTTTGTCCAGTGTTCCAGTTTGATTGCTTATTTGGGTACTTTGGAAAGACAGCAAGTTTTAGAATGGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159251 lncRNA downstream 4517 43438122 ~ 43438335 (-) True G117954
TU159082 lncRNA downstream 210278 43226554 ~ 43232574 (-) False G117811
TU159083 lncRNA downstream 215513 43226554 ~ 43227339 (-) True G117811
TU158876 lncRNA downstream 1006315 42368505 ~ 42436537 (-) True G117662
TU158872 lncRNA downstream 1091657 42350120 ~ 42351195 (-) True G117660
TU159268 lncRNA upstream 137648 43587502 ~ 43645741 (-) False G117963
TU159269 lncRNA upstream 145839 43595693 ~ 43645136 (-) False G117963
TU159271 lncRNA upstream 190422 43640276 ~ 43850446 (-) True G117963
TU159328 lncRNA upstream 324023 43773877 ~ 43775458 (-) True G118011
TU159336 lncRNA upstream 434335 43884189 ~ 43886064 (-) True G118019
XM_022675131.1 mRNA downstream 615921 42745620 ~ 42826931 (-) True dock7
XM_007248177.3 mRNA downstream 714461 42657958 ~ 42728391 (-) True kank4
XM_022675867.1 mRNA upstream 117875 43567729 ~ 43619228 (-) True jak1
XR_002650728.1 other downstream 1860835 41581833 ~ 41582017 (-) True LOC111193790
XR_002650725.1 other downstream 3078892 40360401 ~ 40363960 (-) False LOC103040080
TU157786 other downstream 5058254 38381270 ~ 38384598 (-) True G116805
trnaq-uug_2 other downstream 6349782 37092999 ~ 37093070 (-) True trnaq-uug_2
TU157486 other downstream 6397064 37041361 ~ 37045788 (-) True G116581

Expression Profile