RNA id: NM_001292029.1


Basic Information

Item Value
RNA id NM_001292029.1
length 3149
RNA type mRNA
GC content 0.43
exon number 12
gene id azin1b
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 22141456 ~ 22148362 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGGCTGAGCTGCCATTTCTTCTCTACTCGGATCAGGCAGTGGAAGCCCGCCAGCGCGTTCTCCAGCTCCCCTCACCCAGGCATATGGCAACAACAGCCTCCCCTCTTTCTTTCACCAGTGTCCCCACCACTCTTTAAAAATTCCGCCGAAAAAGAGAAGACGATTTTCCAAATCTTTCAGGCCGTTATCTCACGGCTCCCCTCTTTCTGTCCAAGTGTATAAGAGGTACCCAGAAGGCCTAGGGGAGGCGCTCTACCGGGAGCAGTTCGACTTCAACGCCGAGCCGCCTTGGGATCCTAGTTGATAGCGGGAGAGCTCCATCTCCCAGCTTGTCCATTTTGTTGCATATTAACAGGACCCCAAAGGCTCAGTAAACTCTCTTTATGATTGTCGGATCTGCGGACTACGGTTGAGATGAAAGGATTTACAGATGAACCAAACTACATTGTTGAGCTGCTGGAAGGAGGAACAACCCTTAAAGATGTCATTGACAACCACATTTATGAACAAGCTCTGGCTGAAAAGAATGCATTTGTTGTGGCCAACCTTGGGGCCTTGATGCAGCAGCATGTTCTTTGGCAGAGCATGCTGCCCATGGTCCGGCCCTTTTACCCAGTCAAATATAACAGCAGTCCTGCTGTCATTGAGGTTCTGGCTGCTCTAGGAGTTGGTTTTGTTTGCTCAAACAAGGCTGAAATCTCCCTGGTACTTAACCATGACGTCCCTCCGGAGAACATCATTCTGTCTGGTGTTTGCAAGCAGCTCTCGCACATCAAACATGCTACCAAGAATGGCATCAACTACTTGGTGTGCGACAACGAAGCAGAGCTTTGCAAAATTGCCAGAGCTCACCCAAATGCCAAGTTGCTCCTGCAGTTGTCCACTGAAGCTCAGACAGAAGAGGCCAGCATGGCATTTGGGTGCTCCCTGAAGAGCTGCAGGCACCTTTTGGAAACCTCTAAGGAGCTGGGTGTGGATGTGGTTGGAGTGATGTTCCAGGTACCAGCATCTTGTAGAGACCCCCAAGTTTATACCCACGCACTGTCTGATGCCCGCTGTGTATTTGATATGGGGGCGGAGATTGGGTTTAACATGGAAATTCTGGATATTGGTGGTGGATTCAGTGGCTCAGAGTTTCAGTTGAAACAGATTCATGCTGCTATTAGGCCTTTGCTGGAGGCCTATTTCCCTGTTATGTCTGGAGTGCGCGTCATTGCTGAGCCAGGAACTTTTTATGTGTCTTCCTCTTTCACCTTGGTTGTAAATGTCATTGGAAAGAAAGTGGCAGCAGGCAGTCTTCATGTTGAGACTAAAGATTTGACTCCAAGCGATGAGCCAGAATTTTTGTACTATTTAAATGATGGTGTCTATGGATCTTTTATGGGAAAGCTGTTGGGAAACACCATTCCATCCCCCAAGGTACACAAGatGTCACTTGCAGCAGATGAGCCGATGTTCCCCAGCAGCTTGTGGGGTCCCTCTTGTGACGCATTGGACCAGGTGGTGGAGCACTGCCTTCTCCCTGAGCTCACTGTGGGAGACTGGCTGATCTTCAACAATATGGGGGCCAGTGGTCAAGAGGAGTCCGCAGCCATCAATAACTCAGACAAGCCACCTGTGTATTACACTATTTCTACAGACGACTGGTTTGAGATGCAGGAGGCTGGAATCTCTCTTGACAACACAATGAGGAATTTTTCCTTGGTCCAGTATGGCTTGTAATTGGATAAAATCTGAAGCTGACCCCCTAACTTGGGCATTTCAAGTCAAGTGGTCAGAATTTAAATGGCCTGCATAGTGAACATTCCAGCAGCTATGGGTGGGGACAACAATGTGTAGCCACTAGTAAAGGAACAAGACCAGTGGCATTGGGATCACACAATAAATTATCCTTATCtaattttttcacaatttaCTGATTGAAATGCTCGTTTTCCTTGCCCACCATAGGAATGAGTCCAGGAGCCCCATGTTTATTAACAACATATGCAACAAAATGGACGACTGTGGAGATGGAATCCAGTCATTGGGTTTCTTAATCAAGAATCGTTTACATAAGTgttcaattaatttaattctaTATTGATTACCTGCTGACAGTCTTGTAAATGAGTTGTCTATTGCTCCATTATGCACTTGTCTATATTAAAATCTGATGTGATTTTAATGAGTTTAGATTCTAGTATCAGACGTGTTGCAACCCTTTGTGTAGATTGACAGAGTGGAAATTTTGATATTGATTTGTTATATCAAAGCTTCTCCATCCTAGTCGACCCTGGGTTTTTAGAACTGTGGAGTGCACCTTTGGTTGTGTCTTCAGTACATGGATTGTGACAGTATTTCCCTGTATTAATATGTACTGTCCCTTGGCTTTATGTACTGTGTTTGACTTTGTGGCCTAAAAAGGCTTATAGAATGAGAACTATAGGGTCACACCAGTATACTGTACAAGTACCAAGGACATATGCCTGATATTAAAGAAACCTTTTAGAACTGGGACTTGGGGAAAGTGGCTTTATATAGCATTTGGGTAGGGAAAGAAGGTGACTTCAAGCGAAATGTGCAAGTGCCTGAGGCAGTGTGCTCAAACTACCAGTAACAGTCACCATAAGCGCTGCAAGATTCATGCTATTAATCTCTGACAGCTCCTCTCAGGCTTCTCACAATAAATAGCTGTTTTAAAGATTTGATCATATTTTTCATTGTAAGTAAAACCAACTTACCTAAATGGCTTTTGTCTCCATAACTAAAATGTAATGATTATGGAGTGAAAAACATCTAACACAATATAGTctgatatgtatataatatgagCCCAGGCTATGCTTGTATCATTTTCCCTGAAGAAACAATACTTTGGGACCAGCAGaggagttaaaaaaaaggtgCCAGATGAGGTGTATTTTGTAATGTAGTACAACAATGAAACATTTGATCATATCTTCTTGTGCTGTTTACCTTCCAAAAGGCTTTGTTAAATGtcttttgatttaaaaatttaTAACACCCCTCCATTTAATGAAATCACACCCTTTAGcgatgtaatgtaaaatatttttgtctgaGGCACTAATGGACCATAGCCTGTTTTTGACTGTAATATTGTGTtgtaatgaaaaatattaaCTTAATACACTTCTTTGACTCAT

Function

GO:

id name namespace
GO:0006596 polyamine biosynthetic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270181 lncRNA upstream 149829 21991532 ~ 21991627 (+) True G199006
TU270134 lncRNA upstream 299628 21820975 ~ 21841828 (+) True G198968
TU270131 lncRNA upstream 335717 21805474 ~ 21805739 (+) True G198965
TU270113 lncRNA upstream 484692 21656416 ~ 21656764 (+) True G198947
TU270109 lncRNA upstream 521611 21619638 ~ 21619845 (+) True G198943
TU270254 lncRNA downstream 48304 22196666 ~ 22200711 (+) True G199056
TU270249 lncRNA downstream 49416 22197778 ~ 22200711 (+) False G199056
TU270250 lncRNA downstream 49416 22197778 ~ 22200711 (+) False G199056
TU270251 lncRNA downstream 49416 22197778 ~ 22199041 (+) False G199056
TU270252 lncRNA downstream 49416 22197778 ~ 22200711 (+) False G199056
XM_007249346.3 mRNA upstream 98909 22035185 ~ 22042547 (+) True LOC103030765
XM_007249359.3 mRNA upstream 197202 21931796 ~ 21944254 (+) True LOC103033932
XM_022683176.1 mRNA upstream 269004 21860578 ~ 21872452 (+) True fam92a
XM_007249360.3 mRNA upstream 269004 21860578 ~ 21872452 (+) False fam92a
XM_022683173.1 mRNA upstream 735267 21401489 ~ 21406189 (+) True lrrc69
XM_007249340.3 mRNA downstream 2007 22150369 ~ 22159424 (+) True LOC103028967
XM_022683442.1 mRNA downstream 12447 22160809 ~ 22169858 (+) True mtdh
XM_007249339.3 mRNA downstream 28518 22176880 ~ 22191152 (+) True LOC103028646
XM_015605813.2 mRNA downstream 53190 22201552 ~ 22209038 (+) True LOC103028033
XM_007249337.3 mRNA downstream 53217 22201579 ~ 22209038 (+) False LOC103028033
XR_002651708.1 other upstream 758456 21358464 ~ 21383000 (+) False LOC103037930
TU269957 other upstream 1338566 20802371 ~ 20802890 (+) True G198815
TU269770 other upstream 2052469 20053157 ~ 20088987 (+) True fndc5
XR_454777.3 other upstream 2063161 20053051 ~ 20078295 (+) False fndc5
TU269618 other upstream 2894060 19246972 ~ 19247396 (+) True G198540
TU270302 other downstream 70903 22219265 ~ 22223036 (+) True G199091
TU271111 other downstream 3469566 25617928 ~ 25620129 (+) True ndufs5
TU271109 other downstream 3469672 25618034 ~ 25620129 (+) False ndufs5
TU271110 other downstream 3469672 25618034 ~ 25620129 (+) False ndufs5
TU271396 other downstream 4462067 26610429 ~ 26613182 (+) False c23h18orf21

Expression Profile